Variant report

Variant	rs147577815
Chromosome Location	chr1:220441053-220441054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220440528..220443413-chr1:220443546..220445862,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BPNT1-2	chr1:220439327-220441093	NONHSAT009593
2	lnc-BPNT1-2	chr1:220440048-220441259	NONHSAT009595
3	lnc-BPNT1-2	chr1:220439521-220441057	NONHSAT009594

Variant related genes	Relation type
ENSG00000118873	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4643	chr1:220397642-220442231	Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1001681	chr1:220425057-220548325	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv535298	chr1:220425057-220548325	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv945298	chr1:220439798-220441114	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220416000-220442600	Weak transcription	Fetal Heart	heart
2	chr1:220423000-220443400	Weak transcription	Psoas Muscle	Psoas
3	chr1:220423400-220443400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:220423400-220443400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr1:220423800-220442600	Weak transcription	Hela-S3	cervix
6	chr1:220425200-220443400	Weak transcription	HUVEC	blood vessel
7	chr1:220426200-220441800	Weak transcription	Small Intestine	intestine
8	chr1:220426600-220443400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr1:220426600-220443400	Weak transcription	Right Ventricle	heart
10	chr1:220426600-220444400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:220426800-220441800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr1:220426800-220441800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr1:220426800-220442800	Weak transcription	Esophagus	oesophagus
14	chr1:220426800-220443400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr1:220426800-220443400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr1:220426800-220443400	Weak transcription	Ovary	ovary
17	chr1:220426800-220444000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr1:220426800-220444200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr1:220426800-220444400	Weak transcription	Colonic Mucosa	Colon
20	chr1:220426800-220445000	Weak transcription	Aorta	Aorta
21	chr1:220426800-220445000	Weak transcription	Pancreas	Pancrea
22	chr1:220427000-220441400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr1:220427000-220442800	Weak transcription	Lung	lung
24	chr1:220427000-220443200	Weak transcription	Thymus	Thymus
25	chr1:220427000-220444200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr1:220427000-220445000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr1:220427600-220443400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr1:220432200-220442400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr1:220434400-220441200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
30	chr1:220434600-220441400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr1:220434800-220444800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr1:220435000-220442200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr1:220435000-220443400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr1:220435200-220443400	Weak transcription	Brain Hippocampus Middle	brain
35	chr1:220435800-220442200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr1:220435800-220442800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr1:220436000-220443200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr1:220436200-220442400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr1:220436600-220442400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr1:220436800-220441200	ZNF genes & repeats	Fetal Brain Female	brain
41	chr1:220436800-220442600	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr1:220437000-220443400	Strong transcription	Primary B cells from cord blood	blood
43	chr1:220437400-220442400	Weak transcription	Brain Angular Gyrus	brain
44	chr1:220437600-220443600	Weak transcription	Fetal Lung	lung
45	chr1:220437800-220441200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr1:220437800-220443200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr1:220438800-220441200	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr1:220438800-220442400	Strong transcription	Primary B cells from peripheral blood	blood
49	chr1:220438800-220442600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr1:220439000-220441200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links