Variant report

Variant	rs147606790
Chromosome Location	chr17:38594234-38594235
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38587923..38591705-chr17:38591977..38594441,3	MCF-7	breast:
2	chr17:38592886..38594691-chr17:38595993..38598092,3	MCF-7	breast:
3	chr17:38579876..38582624-chr17:38593992..38595822,2	K562	blood:
4	chr17:38593953..38595936-chr17:38603501..38605145,2	K562	blood:

Variant related genes	Relation type
ENSG00000240125	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833445	chr17:38466474-38637969	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv908223	chr17:38530799-38609187	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv960101	chr17:38594067-38597269	Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38579600-38598800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr17:38584600-38600200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr17:38589600-38598800	Weak transcription	Fetal Intestine Small	intestine
4	chr17:38589800-38598600	Weak transcription	NHDF-Ad	bronchial
5	chr17:38590200-38599000	Weak transcription	Lung	lung
6	chr17:38590400-38597400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr17:38590400-38598600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr17:38590400-38598800	Weak transcription	Osteobl	bone
9	chr17:38590600-38596600	Weak transcription	A549	lung
10	chr17:38592600-38594400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr17:38592600-38594600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr17:38592800-38594400	Enhancers	K562	blood
13	chr17:38593000-38594400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr17:38593200-38594400	Enhancers	Adipose Nuclei	Adipose
15	chr17:38593200-38598800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr17:38593400-38594400	Enhancers	GM12878-XiMat	blood
17	chr17:38593600-38598800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr17:38593800-38594400	Enhancers	Stomach Smooth Muscle	stomach
19	chr17:38593800-38597400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr17:38593800-38598600	Weak transcription	HUVEC	blood vessel
21	chr17:38594000-38597200	Weak transcription	Primary B cells from peripheral blood	blood
22	chr17:38594000-38597400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr17:38594000-38597400	Weak transcription	Liver	Liver
24	chr17:38594000-38598600	Weak transcription	Placenta	Placenta
25	chr17:38594000-38598800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr17:38594000-38598800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr17:38594000-38598800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr17:38594000-38598800	Weak transcription	Fetal Lung	lung
29	chr17:38594000-38598800	Weak transcription	HMEC	breast
30	chr17:38594000-38598800	Weak transcription	NHLF	lung
31	chr17:38594000-38599000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr17:38594200-38596600	Weak transcription	Spleen	Spleen
33	chr17:38594200-38597400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr17:38594200-38597400	Weak transcription	Colon Smooth Muscle	Colon
35	chr17:38594200-38597400	Weak transcription	Fetal Muscle Leg	muscle
36	chr17:38594200-38597400	Weak transcription	Right Ventricle	heart
37	chr17:38594200-38598600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr17:38594200-38598600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr17:38594200-38598600	Weak transcription	Right Atrium	heart
40	chr17:38594200-38598800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr17:38594200-38598800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr17:38594200-38598800	Weak transcription	Esophagus	oesophagus
43	chr17:38594200-38598800	Weak transcription	Left Ventricle	heart
44	chr17:38594200-38598800	Weak transcription	Dnd41	blood
45	chr17:38594200-38599000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr17:38594200-38599000	Weak transcription	HSMM	muscle

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