Variant report

Variant	rs1477185
Chromosome Location	chr2:56504439-56504440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13384514	0.81[AMR][1000 genomes]
rs13387928	0.81[AMR][1000 genomes]
rs13403550	0.81[AMR][1000 genomes]
rs13421888	0.81[AMR][1000 genomes]
rs13429018	0.81[AMR][1000 genomes]
rs13431571	0.81[AMR][1000 genomes]
rs17047743	0.89[AMR][1000 genomes]
rs2904126	0.81[AMR][1000 genomes]
rs60143847	0.81[AMR][1000 genomes]
rs72927159	0.81[AMR][1000 genomes]
rs72927170	0.89[AMR][1000 genomes]
rs754102	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv522006	chr2:56496589-56545845	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56486600-56505000	Weak transcription	Left Ventricle	heart
2	chr2:56487800-56506000	Weak transcription	Psoas Muscle	Psoas
3	chr2:56488000-56514000	Weak transcription	HSMM	muscle
4	chr2:56501800-56504800	Weak transcription	Aorta	Aorta
5	chr2:56503200-56513400	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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