Variant report
| Variant | rs1477188 |
|---|---|
| Chromosome Location | chr18:25223432-25223433 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11083220 | 0.99[ASN][1000 genomes] |
| rs12458483 | 0.89[ASN][1000 genomes] |
| rs1420943 | 0.81[ASN][1000 genomes] |
| rs1477186 | 0.89[ASN][1000 genomes] |
| rs1477187 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17665082 | 0.87[AFR][1000 genomes] |
| rs17665159 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17721591 | 0.80[ASN][1000 genomes] |
| rs2041978 | 0.99[ASN][1000 genomes] |
| rs8083881 | 1.00[ASN][1000 genomes] |
| rs8088804 | 1.00[ASN][1000 genomes] |
| rs8091588 | 0.99[ASN][1000 genomes] |
| rs8092380 | 0.81[ASN][1000 genomes] |
| rs888291 | 0.82[ASN][1000 genomes] |
| rs971244 | 1.00[ASN][1000 genomes] |
| rs9952141 | 0.96[ASN][1000 genomes] |
| rs9952238 | 0.96[ASN][1000 genomes] |
| rs9963988 | 0.81[ASN][1000 genomes] |
| rs9965477 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761996 | chr18:24866083-25818618 | Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv1061993 | chr18:25211720-25239455 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv1067348 | chr18:25213808-25239455 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:25223000-25225000 | Enhancers | Fetal Heart | heart |
