Variant report

Variant	rs147730597
Chromosome Location	chr12:41212837-41212838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427909	chr12:41054306-41322257	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832379	chr12:41054440-41232749	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832380	chr12:41132306-41323961	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv469363	chr12:41155000-41214848	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv558698	chr12:41155000-41214848	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3435443	chr12:41206734-41222972	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41211400-41213200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr12:41211400-41213600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr12:41211400-41214200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr12:41211600-41214400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr12:41212000-41213000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr12:41212400-41214200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:41212600-41213800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr12:41212800-41213400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr12:41212800-41213400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr12:41212800-41213400	Enhancers	Aorta	Aorta
11	chr12:41212800-41213800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:41212800-41214000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr12:41212800-41214000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr12:41212800-41214000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr12:41212800-41214200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr12:41212800-41214200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr12:41212800-41214400	Enhancers	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links