Variant report

Variant	rs147757605
Chromosome Location	chr19:35950201-35950202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:35940497..35942459-chr19:35950134..35952077,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126262	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
5	nsv833811	chr19:35850257-36029535	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv1057692	chr19:35949892-35984103	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
7	nsv543994	chr19:35949892-35984103	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35941600-35970200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:35943000-35952400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr19:35943200-35951800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr19:35946000-35950400	Weak transcription	Brain Anterior Caudate	brain
5	chr19:35946600-35955200	Enhancers	Primary B cells from peripheral blood	blood
6	chr19:35946800-35951800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr19:35947200-35952000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr19:35948000-35952400	Enhancers	Liver	Liver
9	chr19:35948200-35955000	Enhancers	Primary hematopoietic stem cells	blood
10	chr19:35948200-35955000	Enhancers	Fetal Thymus	thymus
11	chr19:35948200-35955600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr19:35948600-35951000	Enhancers	Fetal Intestine Large	intestine
13	chr19:35948600-35951200	Enhancers	Fetal Intestine Small	intestine
14	chr19:35948600-35952400	Enhancers	Fetal Stomach	stomach
15	chr19:35948600-35952600	Enhancers	Fetal Lung	lung
16	chr19:35948600-35953000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr19:35948600-35955000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr19:35948800-35951000	Enhancers	Stomach Mucosa	stomach
19	chr19:35948800-35951000	Flanking Active TSS	HepG2	liver
20	chr19:35948800-35951200	Enhancers	Pancreas	Pancrea
21	chr19:35948800-35954600	Enhancers	Placenta	Placenta
22	chr19:35948800-35955000	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr19:35949200-35950400	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr19:35949400-35950800	Enhancers	Small Intestine	intestine
25	chr19:35949400-35951000	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr19:35949400-35951200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr19:35949400-35952000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr19:35949600-35950400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr19:35949600-35950400	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr19:35949600-35950600	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr19:35949600-35950600	Flanking Active TSS	A549	lung
32	chr19:35949600-35950600	Flanking Active TSS	GM12878-XiMat	blood
33	chr19:35949600-35950800	Flanking Active TSS	Primary B cells from cord blood	blood
34	chr19:35949600-35951000	Enhancers	Fetal Kidney	kidney
35	chr19:35949600-35951200	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr19:35949600-35952200	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr19:35949600-35952600	Enhancers	Fetal Muscle Leg	muscle
38	chr19:35949600-35953800	Enhancers	Spleen	Spleen
39	chr19:35949600-35955800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr19:35949800-35950400	Enhancers	Colonic Mucosa	Colon
41	chr19:35949800-35950600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr19:35949800-35950600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr19:35949800-35950600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr19:35949800-35950600	Enhancers	Gastric	stomach
45	chr19:35949800-35950600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr19:35949800-35951000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr19:35949800-35951000	Enhancers	Brain Cingulate Gyrus	brain
48	chr19:35949800-35951000	Enhancers	Ovary	ovary
49	chr19:35949800-35951200	Enhancers	Lung	lung
50	chr19:35949800-35951200	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links