Variant report

Variant	rs1477713
Chromosome Location	chr21:28532178-28532179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1351020	1.00[EUR][1000 genomes]
rs1477712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1477714	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1477715	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1676561	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs171009	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs235969	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs235970	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs235971	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs235972	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs235974	1.00[EUR][1000 genomes]
rs235979	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2830733	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2830734	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs394924	1.00[EUR][1000 genomes]
rs402866	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067475	chr21:28238746-29046707	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2758532	chr21:28380230-28540443	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	esv2758817	chr21:28380230-28540443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv1062808	chr21:28443252-28537209	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	nsv544414	chr21:28443252-28537209	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28531400-28532200	Enhancers	Ovary	ovary
2	chr21:28531600-28532200	Enhancers	Colon Smooth Muscle	Colon
3	chr21:28531800-28534200	Weak transcription	Aorta	Aorta
4	chr21:28531800-28534400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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