Variant report

Variant	rs1477736
Chromosome Location	chr20:52908791-52908792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17222492	0.88[EUR][1000 genomes]
rs17223034	0.84[EUR][1000 genomes]
rs17313921	0.86[EUR][1000 genomes]
rs2023531	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs2797968	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28515941	0.86[EUR][1000 genomes]
rs28610574	0.86[EUR][1000 genomes]
rs6013946	0.82[EUR][1000 genomes]
rs6023080	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs6023083	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs6023101	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv962638	chr20:52883415-52917517	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52906600-52909600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr20:52907400-52909200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr20:52907400-52909400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr20:52907400-52909600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr20:52907600-52909600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr20:52907600-52909800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr20:52907600-52910000	Enhancers	Stomach Mucosa	stomach
8	chr20:52907800-52909800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr20:52908000-52909000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr20:52908000-52909200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr20:52908000-52909400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr20:52908200-52908800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr20:52908200-52909000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr20:52908200-52909800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr20:52908200-52910200	Enhancers	Colon Smooth Muscle	Colon
16	chr20:52908400-52908800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr20:52908400-52909600	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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