Variant report

Variant	rs147775935
Chromosome Location	chr6:34111472-34111473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34023393..34025806-chr6:34111046..34114201,3	MCF-7	breast:
2	chr6:34110331..34113788-chr6:34116260..34119382,3	MCF-7	breast:
3	chr6:34100230..34104042-chr6:34111323..34114936,4	K562	blood:
4	chr6:34101607..34103904-chr6:34110827..34112823,3	K562	blood:
5	chr6:34107259..34108884-chr6:34110412..34112851,2	MCF-7	breast:
6	chr6:34023163..34023796-chr6:34111451..34112193,2	MCF-7	breast:
7	chr6:34111438..34113496-chr6:34384142..34385841,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124493	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv885780	chr6:34050917-34131376	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv462902	chr6:34056726-34195011	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv602862	chr6:34056726-34195011	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv885781	chr6:34110257-34247661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
10	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
11	esv3421071	chr6:34110799-34113347	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv1816380	chr6:34110880-34206718	Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34108400-34111600	Bivalent Enhancer	Fetal Muscle Leg	muscle
2	chr6:34109600-34111600	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:34109800-34111600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
4	chr6:34110000-34111800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:34110000-34111800	Enhancers	Spleen	Spleen
6	chr6:34110000-34112600	Bivalent Enhancer	Fetal Brain Male	brain
7	chr6:34110000-34112600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
8	chr6:34110200-34111600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:34110200-34111600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:34110200-34111600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:34110200-34111800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:34110200-34111800	Bivalent Enhancer	Fetal Stomach	stomach
13	chr6:34110200-34113200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr6:34110200-34114000	Bivalent Enhancer	Placenta	Placenta
15	chr6:34110400-34111600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:34110400-34111600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
17	chr6:34110400-34111600	Bivalent Enhancer	Colonic Mucosa	Colon
18	chr6:34110400-34112800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:34110400-34114000	Bivalent Enhancer	Fetal Thymus	thymus
20	chr6:34110600-34111600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:34110800-34111600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:34110800-34111800	Bivalent Enhancer	Primary B cells from cord blood	blood
23	chr6:34110800-34111800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
24	chr6:34110800-34113800	Active TSS	H9 Cell Line	embryonic stem cell
25	chr6:34111000-34111600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:34111000-34111600	Bivalent Enhancer	Ovary	ovary
27	chr6:34111000-34112600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
28	chr6:34111200-34111600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
29	chr6:34111200-34111600	Bivalent Enhancer	Brain Angular Gyrus	brain
30	chr6:34111200-34111600	Bivalent Enhancer	Colon Smooth Muscle	Colon
31	chr6:34111200-34111600	Bivalent Enhancer	Fetal Heart	heart
32	chr6:34111200-34111600	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
33	chr6:34111200-34111800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
34	chr6:34111200-34111800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
35	chr6:34111200-34112400	Bivalent Enhancer	Brain Substantia Nigra	brain
36	chr6:34111200-34112800	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
37	chr6:34111200-34112800	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
38	chr6:34111200-34112800	Enhancers	Gastric	stomach
39	chr6:34111200-34114000	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
40	chr6:34111400-34111600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr6:34111400-34111600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:34111400-34111600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:34111400-34111600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
44	chr6:34111400-34111600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr6:34111400-34111600	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:34111400-34111600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:34111400-34111600	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:34111400-34111600	Bivalent Enhancer	Adipose Nuclei	Adipose
49	chr6:34111400-34111600	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
50	chr6:34111400-34111600	Bivalent Enhancer	Esophagus	oesophagus

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