Variant report

Variant	rs147781393
Chromosome Location	chr6:11834682-11834683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11831000-11835400	Weak transcription	Left Ventricle	heart
2	chr6:11833800-11834800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:11833800-11834800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:11833800-11835200	Flanking Active TSS	K562	blood
5	chr6:11833800-11835600	Flanking Active TSS	GM12878-XiMat	blood
6	chr6:11833800-11835800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:11833800-11835800	Enhancers	Liver	Liver
8	chr6:11833800-11836000	Enhancers	Fetal Muscle Leg	muscle
9	chr6:11834000-11836000	Enhancers	Fetal Heart	heart
10	chr6:11834200-11834800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:11834200-11835200	Weak transcription	Pancreas	Pancrea
12	chr6:11834200-11835400	Weak transcription	Esophagus	oesophagus
13	chr6:11834200-11835400	Weak transcription	Gastric	stomach
14	chr6:11834200-11836400	Enhancers	Fetal Lung	lung
15	chr6:11834400-11835800	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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