Variant report

Variant	rs147785861
Chromosome Location	chr13:79946751-79946752
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:79944448..79946891-chr13:79951431..79952941,2	MCF-7	breast:
2	chr13:79945909..79948690-chr13:79954494..79956111,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900586	chr13:79892722-79968467	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv900587	chr13:79894736-79956691	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	esv3330376	chr13:79945976-79948724	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3420791	chr13:79946451-79948499	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79886600-79950200	Weak transcription	Fetal Brain Male	brain
2	chr13:79888200-79947000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr13:79888400-79947000	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr13:79891600-79946800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr13:79891600-79947000	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr13:79891600-79947000	Strong transcription	Dnd41	blood
7	chr13:79893200-79957800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr13:79894400-79950200	Weak transcription	Stomach Mucosa	stomach
9	chr13:79921200-79947000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr13:79921600-79946800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr13:79922400-79947000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:79923000-79950600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr13:79923200-79946800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr13:79924000-79947000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr13:79924400-79947000	Strong transcription	Primary B cells from peripheral blood	blood
16	chr13:79925600-79947000	Strong transcription	Fetal Intestine Large	intestine
17	chr13:79926800-79947000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr13:79930800-79946800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr13:79935400-79947000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr13:79935800-79946800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr13:79936000-79946800	Strong transcription	HSMM	muscle
22	chr13:79936800-79946800	Strong transcription	A549	lung
23	chr13:79936800-79948600	Weak transcription	Fetal Heart	heart
24	chr13:79937600-79946800	Strong transcription	HepG2	liver
25	chr13:79937800-79946800	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr13:79938000-79947000	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr13:79938200-79946800	Strong transcription	GM12878-XiMat	blood
28	chr13:79938600-79947000	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr13:79940200-79946800	Strong transcription	NHEK	skin
30	chr13:79941200-79948000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr13:79941200-79950200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr13:79941200-79951000	Weak transcription	Aorta	Aorta
33	chr13:79941800-79956600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr13:79942000-79950200	Weak transcription	Small Intestine	intestine
35	chr13:79942000-79950400	Weak transcription	Gastric	stomach
36	chr13:79942000-79967400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr13:79942400-79948200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr13:79942400-79948200	Weak transcription	Right Ventricle	heart
39	chr13:79942400-79950600	Weak transcription	Pancreas	Pancrea
40	chr13:79943000-79946800	Strong transcription	Colonic Mucosa	Colon
41	chr13:79943000-79957800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr13:79943200-79947000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr13:79943800-79948000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr13:79944000-79946800	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr13:79944400-79950400	Weak transcription	Spleen	Spleen
46	chr13:79944400-79951000	Weak transcription	Esophagus	oesophagus
47	chr13:79944800-79950200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr13:79944800-79950200	Weak transcription	Brain Angular Gyrus	brain
49	chr13:79945000-79949400	Weak transcription	Brain Hippocampus Middle	brain
50	chr13:79945200-79948200	Weak transcription	Fetal Brain Female	brain

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