Variant report

Variant	rs1479137
Chromosome Location	chr3:142623798-142623799
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142562977..142563804-chr3:142623385..142624273,2	MCF-7	breast:
2	chr3:142305389..142306193-chr3:142623757..142624589,2	K562	blood:
3	chr3:142623378..142625294-chr3:142630641..142632428,2	MCF-7	breast:
4	chr3:142623173..142624153-chr3:142705646..142706555,2	K562	blood:
5	chr3:142547606..142548431-chr3:142623663..142624603,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11708647	0.84[AFR][1000 genomes]
rs11716897	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11718990	0.82[CEU][hapmap]
rs11719232	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1470121	0.84[AFR][1000 genomes]
rs4683434	0.81[AFR][1000 genomes]
rs4683701	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs4683702	0.84[AFR][1000 genomes]
rs9812948	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142618000-142628000	Weak transcription	Aorta	Aorta
2	chr3:142622600-142624600	Enhancers	Stomach Mucosa	stomach
3	chr3:142623000-142624000	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr3:142623000-142624200	Enhancers	Fetal Intestine Small	intestine
5	chr3:142623200-142624000	Enhancers	Spleen	Spleen
6	chr3:142623200-142624200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:142623200-142624200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:142623200-142624200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr3:142623200-142624200	Enhancers	HMEC	breast
10	chr3:142623200-142624600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:142623200-142624600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:142623400-142623800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:142623400-142623800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:142623400-142623800	Enhancers	Fetal Heart	heart
15	chr3:142623400-142623800	Enhancers	NH-A	brain
16	chr3:142623400-142624000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr3:142623400-142624000	Enhancers	Duodenum Mucosa	Duodenum
18	chr3:142623400-142624000	Enhancers	Placenta	Placenta
19	chr3:142623400-142624000	Enhancers	Right Atrium	heart
20	chr3:142623400-142624000	Enhancers	NHEK	skin
21	chr3:142623400-142624000	Flanking Active TSS	Osteobl	bone
22	chr3:142623400-142624200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:142623400-142624200	Enhancers	Right Ventricle	heart
24	chr3:142623400-142624200	Enhancers	K562	blood
25	chr3:142623400-142624400	Enhancers	Primary B cells from peripheral blood	blood
26	chr3:142623400-142624400	Enhancers	GM12878-XiMat	blood
27	chr3:142623400-142624600	Enhancers	NHDF-Ad	bronchial
28	chr3:142623400-142624800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr3:142623400-142624800	Enhancers	A549	lung
30	chr3:142623400-142630200	Weak transcription	Left Ventricle	heart
31	chr3:142623600-142624000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:142623600-142624000	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr3:142623600-142624000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr3:142623600-142624000	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
35	chr3:142623600-142624000	Enhancers	Monocytes-CD14+_RO01746	blood

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