Variant report

Variant	rs147962000
Chromosome Location	chr15:44858159-44858160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44849662..44852337-chr15:44856313..44858225,2	K562	blood:
2	chr15:44845074..44847920-chr15:44856159..44858171,2	K562	blood:

Variant related genes	Relation type
ENSG00000259659	Chromatin interaction
ENSG00000104131	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
3	nsv827313	chr15:44857356-44863482	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44842000-44951600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:44843200-44867800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:44843200-44868000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:44843600-44866000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:44843800-44867600	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr15:44844000-44866400	Strong transcription	Placenta	Placenta
7	chr15:44844000-44867600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:44844000-44867600	Strong transcription	Fetal Muscle Trunk	muscle
9	chr15:44844000-44868200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr15:44844000-44870400	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr15:44844200-44861800	Strong transcription	Muscle Satellite Cultured Cells	--
12	chr15:44844600-44867400	Strong transcription	Stomach Smooth Muscle	stomach
13	chr15:44844600-44867600	Strong transcription	Rectal Mucosa Donor 31	rectum
14	chr15:44845600-44865800	Strong transcription	Osteobl	bone
15	chr15:44848000-44858600	Strong transcription	HUVEC	blood vessel
16	chr15:44848000-44859000	Strong transcription	HSMMtube	muscle
17	chr15:44848400-44860600	Strong transcription	Skeletal Muscle Male	skeletal muscle
18	chr15:44848400-44868200	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr15:44849000-44858600	Strong transcription	NHDF-Ad	bronchial
20	chr15:44849000-44860800	Strong transcription	HMEC	breast
21	chr15:44849200-44859400	Strong transcription	K562	blood
22	chr15:44850400-44858400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr15:44850600-44863800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:44850600-44863800	Strong transcription	NHEK	skin
25	chr15:44850800-44859200	Strong transcription	Placenta Amnion	Placenta Amnion
26	chr15:44852000-44863400	Strong transcription	Rectal Smooth Muscle	rectum
27	chr15:44853200-44861200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr15:44853200-44867400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr15:44853400-44861000	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr15:44853400-44863200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr15:44853600-44867400	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:44854400-44858800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr15:44854400-44863200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
34	chr15:44854600-44861000	Strong transcription	Brain Anterior Caudate	brain
35	chr15:44854800-44859200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr15:44855000-44858600	Strong transcription	HepG2	liver
37	chr15:44855000-44867000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr15:44855000-44867600	Strong transcription	Primary T cells from cord blood	blood
39	chr15:44855200-44858800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr15:44855200-44859200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr15:44855200-44859800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:44855200-44860800	Strong transcription	Colon Smooth Muscle	Colon
43	chr15:44855200-44860800	Strong transcription	Right Ventricle	heart
44	chr15:44855200-44862200	Strong transcription	Brain Inferior Temporal Lobe	brain
45	chr15:44855200-44863000	Strong transcription	Brain Cingulate Gyrus	brain
46	chr15:44855200-44863400	Strong transcription	Left Ventricle	heart
47	chr15:44855200-44863800	Strong transcription	Gastric	stomach
48	chr15:44855600-44858800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr15:44855600-44859000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr15:44855600-44863600	Strong transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links