Variant report

Variant	rs1479960
Chromosome Location	chr3:22009633-22009634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11129035	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11129036	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12487974	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12488821	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12489517	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12489570	0.99[ASN][1000 genomes]
rs12631100	0.85[ASN][1000 genomes]
rs12634207	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634535	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12636900	0.93[ASN][1000 genomes]
rs12638192	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12639321	0.93[ASN][1000 genomes]
rs1383075	0.90[ASN][1000 genomes]
rs166317	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17644025	0.97[ASN][1000 genomes]
rs17644255	0.98[ASN][1000 genomes]
rs2291817	0.91[ASN][1000 genomes]
rs2291818	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2291819	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2291820	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2336519	0.81[AFR][1000 genomes]
rs2336520	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34995962	0.85[ASN][1000 genomes]
rs3821391	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs559467	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563129	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58842146	0.98[ASN][1000 genomes]
rs66530626	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67125873	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6763267	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6765798	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68055552	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72625849	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72625850	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7619247	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7642008	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751992	chr3:21786893-22212357	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv948555	chr3:21786893-22212357	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1003085	chr3:21887971-22415107	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv834633	chr3:21918264-22088338	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv876616	chr3:21946847-22310622	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv876617	chr3:21955784-22310622	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999478	chr3:21971861-22012241	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
8	nsv1000732	chr3:21976969-22012241	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
9	nsv1007663	chr3:21984364-22022923	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
10	nsv1014852	chr3:21985380-22010086	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
11	nsv1012249	chr3:21985380-22012241	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
12	nsv1009404	chr3:21985380-22018041	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
13	nsv1001030	chr3:21985380-22022923	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
14	nsv460474	chr3:21985417-22047934	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
15	nsv589932	chr3:21985417-22047934	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
16	nsv1007886	chr3:21985691-22018041	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
17	nsv998319	chr3:21999480-22033364	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
18	nsv432404	chr3:22000296-22433396	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv876618	chr3:22005074-22057218	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22009600-22010200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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