Variant report

Variant	rs148054269
Chromosome Location	chr2:152526856-152526857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:152524436..152527296-chr2:152527815..152531514,4	K562	blood:
2	chr2:152525703..152527793-chr2:152563733..152565410,2	K562	blood:

Variant related genes	Relation type
ENSG00000183091	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934136	chr2:152308156-152664443	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1005746	chr2:152361972-153059840	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv535984	chr2:152361972-153059840	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv469804	chr2:152404429-152570882	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv482520	chr2:152404429-152570882	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv933357	chr2:152526786-152591138	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152504400-152531600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:152505200-152543600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:152511200-152531200	Strong transcription	Fetal Muscle Trunk	muscle
4	chr2:152511400-152531400	Strong transcription	Fetal Muscle Leg	muscle
5	chr2:152514600-152542800	Strong transcription	HSMMtube	muscle
6	chr2:152515400-152529000	Weak transcription	Aorta	Aorta
7	chr2:152520400-152528600	Weak transcription	Brain Anterior Caudate	brain
8	chr2:152521600-152537800	Weak transcription	Psoas Muscle	Psoas
9	chr2:152522600-152527400	Weak transcription	Spleen	Spleen
10	chr2:152525400-152527200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr2:152525400-152527400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:152525400-152530000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
13	chr2:152525600-152527200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr2:152525600-152527800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr2:152525600-152533000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
16	chr2:152525800-152527200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:152525800-152527600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr2:152526000-152527000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr2:152526000-152527000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr2:152526000-152527800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr2:152526000-152527800	Enhancers	H9 Cell Line	embryonic stem cell
22	chr2:152526000-152527800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr2:152526200-152527400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr2:152526200-152527800	Enhancers	Fetal Heart	heart
25	chr2:152526200-152527800	Enhancers	Fetal Intestine Small	intestine
26	chr2:152526400-152527400	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr2:152526400-152527400	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr2:152526400-152527400	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr2:152526400-152528000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr2:152526600-152527600	Enhancers	K562	blood

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