Variant report

Variant	rs1481062
Chromosome Location	chr8:39898740-39898741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:39895651..39897213-chr8:39897481..39900329,2	MCF-7	breast:
2	chr8:39897663..39901671-chr8:39911802..39914452,3	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10094694	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10095021	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888662	0.87[AFR][1000 genomes]
rs16888813	1.00[CEU][hapmap]
rs1842539	0.88[AFR][1000 genomes]
rs2001923	0.86[EUR][1000 genomes]
rs28459897	0.86[AFR][1000 genomes]
rs28814288	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474201	0.86[EUR][1000 genomes]
rs6984068	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632016	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7818934	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7836303	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39895000-39900000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:39895400-39899600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:39895800-39899200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:39896800-39899400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:39896800-39899600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:39896800-39899600	Enhancers	Fetal Lung	lung
7	chr8:39897000-39899200	Enhancers	Fetal Intestine Small	intestine
8	chr8:39897200-39899600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:39897400-39899200	Enhancers	Fetal Intestine Large	intestine
10	chr8:39897400-39901200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:39897600-39899000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr8:39897600-39899800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:39897600-39903400	Enhancers	HepG2	liver
14	chr8:39897800-39899000	Enhancers	Colon Smooth Muscle	Colon
15	chr8:39897800-39899000	Enhancers	Duodenum Mucosa	Duodenum
16	chr8:39897800-39899000	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr8:39897800-39899000	Enhancers	Rectal Smooth Muscle	rectum
18	chr8:39897800-39899200	Enhancers	NHDF-Ad	bronchial
19	chr8:39898000-39899000	Weak transcription	Placenta	Placenta
20	chr8:39898000-39899200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:39898000-39899200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:39898000-39899200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:39898000-39899200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:39898000-39899400	Enhancers	NHLF	lung
25	chr8:39898000-39899600	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr8:39898000-39899800	Enhancers	Stomach Mucosa	stomach
27	chr8:39898200-39899000	Enhancers	Right Atrium	heart
28	chr8:39898200-39899600	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr8:39898200-39899600	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr8:39898200-39899600	Enhancers	Small Intestine	intestine
31	chr8:39898400-39899000	Enhancers	NH-A	brain
32	chr8:39898400-39899600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr8:39898400-39899600	Enhancers	Lung	lung
34	chr8:39898400-39899600	Enhancers	Stomach Smooth Muscle	stomach
35	chr8:39898400-39900000	Enhancers	Pancreas	Pancrea
36	chr8:39898400-39900400	Enhancers	Liver	Liver
37	chr8:39898600-39899000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr8:39898600-39899200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr8:39898600-39899200	Flanking Active TSS	A549	lung
40	chr8:39898600-39899600	Enhancers	Placenta Amnion	Placenta Amnion
41	chr8:39898600-39899600	Flanking Active TSS	Hela-S3	cervix

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