Variant report

Variant	rs148152550
Chromosome Location	chr6:140363842-140363843
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140362168..140365003-chr6:140377211..140380163,3	MCF-7	breast:
2	chr6:140363202..140365064-chr6:140365355..140367836,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv970352	chr6:140363091-140366380	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140351400-140366600	Weak transcription	Aorta	Aorta
2	chr6:140353600-140365600	Weak transcription	Left Ventricle	heart
3	chr6:140358200-140366600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:140360800-140366400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:140361200-140365400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:140361200-140365800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:140361200-140366800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:140361200-140366800	Enhancers	HMEC	breast
9	chr6:140361200-140367000	Enhancers	NHEK	skin
10	chr6:140361600-140365600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:140362200-140366400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:140362400-140364000	Weak transcription	NHDF-Ad	bronchial
13	chr6:140362400-140364200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:140362400-140364200	Weak transcription	Osteobl	bone
15	chr6:140362400-140364400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:140362400-140365000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:140362400-140366200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:140362600-140364200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:140362800-140365600	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr6:140363000-140364400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:140363000-140365000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:140363000-140366400	Enhancers	HSMM	muscle
23	chr6:140363200-140365600	Enhancers	NHLF	lung
24	chr6:140363200-140366800	Enhancers	Hela-S3	cervix
25	chr6:140363400-140364000	Weak transcription	HSMMtube	muscle
26	chr6:140363400-140370800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:140363400-140370800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:140363600-140364400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr6:140363600-140365000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:140363600-140365600	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links