Variant report

Variant	rs148187655
Chromosome Location	chr16:12473122-12473123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:12470715..12473444-chr16:12481044..12482837,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043096	chr16:12013915-12840769	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv833141	chr16:12314613-12487992	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv457411	chr16:12363304-12520199	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv571462	chr16:12363304-12520199	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv571463	chr16:12367791-12783535	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1045385	chr16:12376389-12517006	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv542748	chr16:12376389-12517006	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3377322	chr16:12473076-12475624	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:12435800-12484000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:12444800-12491400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr16:12453200-12479000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr16:12455600-12479400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr16:12456800-12478600	Weak transcription	Ovary	ovary
6	chr16:12457000-12492400	Weak transcription	Lung	lung
7	chr16:12457400-12497400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr16:12457600-12491600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr16:12457600-12497400	Weak transcription	Spleen	Spleen
10	chr16:12461000-12473400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr16:12461200-12490200	Weak transcription	GM12878-XiMat	blood
12	chr16:12468200-12475800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr16:12469000-12474000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr16:12469600-12473200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr16:12470200-12497400	Weak transcription	Left Ventricle	heart
16	chr16:12470800-12476000	Weak transcription	Primary B cells from cord blood	blood
17	chr16:12470800-12479200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr16:12471000-12480800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr16:12471000-12486000	Weak transcription	HSMMtube	muscle
20	chr16:12471200-12494200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr16:12471400-12485800	Weak transcription	Colon Smooth Muscle	Colon
22	chr16:12471600-12473200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr16:12471600-12478200	Weak transcription	Primary T cells from cord blood	blood
24	chr16:12471600-12479800	Weak transcription	Brain Anterior Caudate	brain
25	chr16:12471800-12473200	Weak transcription	Brain Substantia Nigra	brain
26	chr16:12471800-12493400	Weak transcription	Aorta	Aorta
27	chr16:12471800-12495800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr16:12471800-12499000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr16:12472000-12473600	Enhancers	Adipose Nuclei	Adipose
30	chr16:12472200-12486000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr16:12472800-12473800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr16:12472800-12473800	Enhancers	Brain Hippocampus Middle	brain
33	chr16:12472800-12479600	Weak transcription	Esophagus	oesophagus
34	chr16:12473000-12473600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links