Variant report

Variant	rs148215323
Chromosome Location	chr2:169757618-169757619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr2:169757618-169757668	ovcar-3	ovarian:	n/a
2	chr2:169757618-169757668	HUVEC	blood vessel:	n/a
3	chr2:169757618-169757668	HIPEpiC	eye:	n/a
4	chr2:169757618-169757668	HMEC	breast:	n/a
5	chr2:169757618-169757668	HRCEpiC	kidney:	n/a
6	chr2:169757618-169757668	BJ	skin:	n/a
7	chr2:169757618-169757668	A549	lung:	n/a
8	chr2:169757618-169757668	PFSK-1	brain:	n/a
9	chr2:169757618-169757668	MCF10A-Er-Src	breast:	n/a
10	chr2:169757618-169757668	GM06990	blood:	n/a
11	chr2:169757618-169757668	AG09309	skin:	n/a
12	chr2:169757618-169757668	H1-hESC	embryonic stem cell:	embryo
13	chr2:169757618-169757668	Hela-S3	cervix:	n/a
14	chr2:169757618-169757668	AG09319	gingival:	n/a
15	chr2:169757618-169757668	BE2_C	brain:	n/a
16	chr2:169757618-169757668	AG04449	skin:	fetal
17	chr2:169757618-169757668	AoSMC	blood vessel:	n/a
18	chr2:169757618-169757668	RPTEC	kidney:	n/a
19	chr2:169757618-169757668	NH-A	brain:	n/a
20	chr2:169757618-169757668	U87	brain:	n/a
21	chr2:169757618-169757668	HL-60	blood:	n/a
22	chr2:169757618-169757668	T-47D	breast:	n/a
23	chr2:169757618-169757668	GM19239	blood:	n/a
24	chr2:169757618-169757668	PANC-1	pancreas:	n/a
25	chr2:169757618-169757668	NT2-D1	testis:	n/a
26	chr2:169757618-169757668	HAEpiC	amniotic membrane:	n/a
27	chr2:169757618-169757668	AG10803	skin:	n/a
28	chr2:169757618-169757668	HPAEpiC	pulmonary alveolar:	n/a
29	chr2:169757618-169757668	PrEC	prostate:	n/a
30	chr2:169757618-169757668	CMK	blood:	n/a
31	chr2:169757618-169757668	HCT-116	colon:	n/a
32	chr2:169757618-169757668	ECC-1	luminal epithelium:	n/a
33	chr2:169757618-169757668	SKMC	muscle:	n/a
34	chr2:169757618-169757668	NB4	blood:	n/a
35	chr2:169757618-169757668	SK-N-SH	brain:	n/a
36	chr2:169757618-169757668	HNPCEpiC	eye:	n/a
37	chr2:169757618-169757668	Hepatocyte	liver:	n/a
38	chr2:169757618-169757668	Jurkat	blood:	n/a
39	chr2:169757618-169757668	ProgFib	skin:	n/a
40	chr2:169757618-169757668	HepG2	liver:	n/a
41	chr2:169757618-169757668	AG04450	lung:	fetal
42	chr2:169757618-169757668	HEK293	kidney:	embryo
43	chr2:169757618-169757668	HRE	kidney:	n/a
44	chr2:169757618-169757668	LNCaP	prostate:	n/a
45	chr2:169757618-169757668	HCM	heart:	n/a
46	chr2:169757618-169757668	SK-N-SH_RA	brain:	n/a
47	chr2:169757618-169757668	HCF	heart:	n/a
48	chr2:169757618-169757668	Caco-2	colon:	n/a
49	chr2:169757618-169757668	SK-N-MC	brain:	n/a
50	chr2:169757618-169757668	GM12891	blood:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:169755958..169758089-chr2:169767448..169770171,2	K562	blood:

No data

Variant related genes	Relation type
G6PC2	CpG island
ENSG00000152253	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583599	chr2:169664227-169903096	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv459943	chr2:169756930-169799010	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv583600	chr2:169756930-169799010	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169756600-169758000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:169756800-169757800	Enhancers	Brain Cingulate Gyrus	brain
3	chr2:169757000-169760400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:169757400-169762000	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr2:169757600-169757800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:169757600-169757800	Enhancers	Ovary	ovary
7	chr2:169757600-169757800	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links