Variant report

Variant	rs1482617
Chromosome Location	chr3:83012312-83012313
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11127800	0.91[ASN][1000 genomes]
rs11127801	0.91[ASN][1000 genomes]
rs1384418	0.91[ASN][1000 genomes]
rs1384419	0.91[ASN][1000 genomes]
rs17020399	1.00[ASN][1000 genomes]
rs17020415	0.96[ASN][1000 genomes]
rs17020418	0.91[ASN][1000 genomes]
rs17043367	0.91[ASN][1000 genomes]
rs41423551	0.91[ASN][1000 genomes]
rs57836267	1.00[ASN][1000 genomes]
rs60077885	0.89[ASN][1000 genomes]
rs61570730	0.89[ASN][1000 genomes]
rs62259873	0.83[ASN][1000 genomes]
rs62259874	0.83[ASN][1000 genomes]
rs62259903	0.89[ASN][1000 genomes]
rs62259904	0.89[ASN][1000 genomes]
rs62259905	0.89[ASN][1000 genomes]
rs62259906	0.89[ASN][1000 genomes]
rs62259955	0.96[ASN][1000 genomes]
rs62259957	0.96[ASN][1000 genomes]
rs62259958	0.96[ASN][1000 genomes]
rs62259959	0.91[ASN][1000 genomes]
rs62261161	0.91[ASN][1000 genomes]
rs62261162	0.91[ASN][1000 genomes]
rs62261163	0.91[ASN][1000 genomes]
rs62261164	0.91[ASN][1000 genomes]
rs62261165	0.89[ASN][1000 genomes]
rs62261166	0.91[ASN][1000 genomes]
rs62261168	0.91[ASN][1000 genomes]
rs62261169	0.91[ASN][1000 genomes]
rs62261170	0.91[ASN][1000 genomes]
rs62261173	0.91[ASN][1000 genomes]
rs62261174	0.91[ASN][1000 genomes]
rs62261224	0.89[ASN][1000 genomes]
rs62261225	0.89[ASN][1000 genomes]
rs7617349	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830308	chr3:82741198-83269730	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv877047	chr3:82869089-83027612	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv877048	chr3:82869089-83324183	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv877050	chr3:82873604-83012312	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv877051	chr3:82888913-83324183	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1000344	chr3:82903854-83046837	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv877052	chr3:82906400-83027612	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv590805	chr3:82906400-83039277	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv877053	chr3:82918947-83012312	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv460735	chr3:82923361-83022387	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv590806	chr3:82923361-83022387	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv877054	chr3:82937940-83089596	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:83011800-83013000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr3:83011800-83013000	Enhancers	Dnd41	blood
3	chr3:83012000-83012400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:83012000-83012400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:83012000-83012800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:83012200-83012400	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links