Variant report

Variant	rs148274345
Chromosome Location	chr9:95570496-95570497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr9:95570330-95570501	H1-hESC	embryonic stem cell:	n/a	n/a
2	SUZ12	chr9:95569398-95572352	NT2-D1	testis:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:95570373..95571952-chr9:95637590..95640500,2	MCF-7	breast:
2	chr9:95431083..95433127-chr9:95569211..95571144,2	MCF-7	breast:
3	chr9:95431331..95434473-chr9:95569877..95572688,3	MCF-7	breast:

Variant related genes	Relation type
ANKRD19P	TF binding region
ENSG00000127080	Chromatin interaction
ENSG00000127081	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv972420	chr9:95566045-95588965	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3373736	chr9:95569656-95572504	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95569200-95571200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
2	chr9:95569400-95570600	Bivalent Enhancer	Primary B cells from cord blood	blood
3	chr9:95569400-95570600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
4	chr9:95569400-95571400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
5	chr9:95569400-95571600	Bivalent Enhancer	Fetal Muscle Leg	muscle
6	chr9:95569400-95572400	Bivalent Enhancer	Fetal Brain Male	brain
7	chr9:95569400-95572400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr9:95569400-95572400	Bivalent Enhancer	Fetal Thymus	thymus
9	chr9:95569600-95570600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:95569600-95570800	Bivalent Enhancer	Adipose Nuclei	Adipose
11	chr9:95569600-95570800	Enhancers	Right Atrium	heart
12	chr9:95569600-95571000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:95569600-95571200	Enhancers	Pancreas	Pancrea
14	chr9:95569600-95571400	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
15	chr9:95569600-95572200	Bivalent Enhancer	Fetal Stomach	stomach
16	chr9:95569600-95572400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
17	chr9:95569600-95572400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
18	chr9:95569600-95572400	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr9:95569600-95572400	Flanking Active TSS	Right Ventricle	heart
20	chr9:95569600-95572600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
21	chr9:95569800-95570600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
22	chr9:95569800-95570600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:95569800-95570800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
24	chr9:95569800-95571000	Enhancers	Lung	lung
25	chr9:95569800-95571200	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
26	chr9:95569800-95571200	Enhancers	Gastric	stomach
27	chr9:95569800-95571600	Bivalent Enhancer	Placenta	Placenta
28	chr9:95569800-95572200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
29	chr9:95569800-95572400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:95569800-95572400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
31	chr9:95570000-95570600	Bivalent Enhancer	Brain Substantia Nigra	brain
32	chr9:95570000-95570600	Bivalent Enhancer	Thymus	Thymus
33	chr9:95570000-95570600	Bivalent Enhancer	NHEK	skin
34	chr9:95570000-95570800	Bivalent Enhancer	Aorta	Aorta
35	chr9:95570000-95570800	Active TSS	Brain Anterior Caudate	brain
36	chr9:95570000-95570800	Bivalent Enhancer	Esophagus	oesophagus
37	chr9:95570000-95570800	Bivalent Enhancer	Rectal Smooth Muscle	rectum
38	chr9:95570000-95571000	Bivalent Enhancer	Ovary	ovary
39	chr9:95570000-95571000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
40	chr9:95570000-95571800	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
41	chr9:95570000-95571800	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
42	chr9:95570000-95571800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
43	chr9:95570000-95572000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
44	chr9:95570000-95572200	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
45	chr9:95570000-95572400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
46	chr9:95570000-95572400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
47	chr9:95570000-95572400	Bivalent Enhancer	Liver	Liver
48	chr9:95570000-95572600	Bivalent Enhancer	Stomach Mucosa	stomach
49	chr9:95570200-95570600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
50	chr9:95570200-95570600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links