Variant report

Variant	rs148304073
Chromosome Location	chr7:121782408-121782409
allele	-/CAGTAGACTCAC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121777883..121779429-chr7:121782207..121783905,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427803	chr7:121701581-121876302	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1019004	chr7:121733372-121800380	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1034553	chr7:121734934-121800380	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv523632	chr7:121754695-121802068	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1016617	chr7:121770441-121820730	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2141331	chr7:121782408-121782420	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121744600-121783200	Weak transcription	Lung	lung
2	chr7:121756600-121783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:121756600-121783200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:121756800-121783000	Weak transcription	Fetal Intestine Large	intestine
5	chr7:121775600-121783200	Weak transcription	Gastric	stomach
6	chr7:121776400-121783000	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
7	chr7:121777600-121782800	Weak transcription	Fetal Brain Female	brain
8	chr7:121777600-121783000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:121777600-121783200	Weak transcription	Esophagus	oesophagus
10	chr7:121777800-121783000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:121777800-121783200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr7:121778000-121782800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:121778000-121782800	Weak transcription	HMEC	breast
14	chr7:121778000-121783000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr7:121778000-121783000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr7:121778000-121783000	Weak transcription	Fetal Brain Male	brain
17	chr7:121778000-121783000	Weak transcription	Fetal Muscle Leg	muscle
18	chr7:121778000-121783000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr7:121778200-121782800	Weak transcription	NH-A	brain
20	chr7:121778200-121783000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:121778200-121783000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:121778200-121783000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:121778200-121783000	Weak transcription	Adipose Nuclei	Adipose
24	chr7:121778200-121783000	Weak transcription	Brain Anterior Caudate	brain
25	chr7:121778200-121783000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr7:121778200-121783000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:121778200-121783000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr7:121778200-121783000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr7:121778200-121783000	Weak transcription	Psoas Muscle	Psoas
30	chr7:121778200-121783000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr7:121778200-121783000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr7:121778200-121783000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr7:121778200-121783000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr7:121778200-121783000	Weak transcription	HSMM	muscle
35	chr7:121778200-121783400	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr7:121779000-121782800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:121779600-121785400	Active TSS	H9 Cell Line	embryonic stem cell
38	chr7:121779800-121783600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr7:121779800-121784800	Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr7:121780000-121785000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr7:121780600-121782800	Enhancers	NHEK	skin
42	chr7:121780800-121783000	Enhancers	Osteobl	bone
43	chr7:121781000-121782800	Enhancers	Muscle Satellite Cultured Cells	--
44	chr7:121781000-121782800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:121781000-121783200	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
46	chr7:121781000-121785000	Active TSS	ES-I3 Cell Line	embryonic stem cell
47	chr7:121781200-121782800	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr7:121781200-121782800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr7:121781200-121783000	Enhancers	Fetal Heart	heart
50	chr7:121781200-121785200	Active TSS	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links