Variant report

Variant	rs148352394
Chromosome Location	chr4:54654473-54654474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879016	chr4:54638218-54710952	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv19126	chr4:54653249-54709054	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54648600-54655600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:54650600-54654600	Enhancers	NHDF-Ad	bronchial
3	chr4:54651400-54654600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:54653200-54655200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:54653400-54655200	Weak transcription	Fetal Kidney	kidney
6	chr4:54653600-54657400	Weak transcription	Osteobl	bone
7	chr4:54653600-54659000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:54654200-54655000	Weak transcription	Placenta	Placenta
9	chr4:54654200-54655200	Enhancers	NHLF	lung
10	chr4:54654200-54655800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:54654400-54654600	Enhancers	Lung	lung
12	chr4:54654400-54655800	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:54654400-54656200	Enhancers	Fetal Muscle Leg	muscle
14	chr4:54654400-54659000	Weak transcription	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links