Variant report

Variant	rs1483828
Chromosome Location	chr3:25455402-25455403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11706561	0.97[ASN][1000 genomes]
rs11716604	0.97[ASN][1000 genomes]
rs13085878	0.97[ASN][1000 genomes]
rs1384898	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2364117	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4681022	0.85[ASN][1000 genomes]
rs4681061	0.97[ASN][1000 genomes]
rs6550974	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7620529	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7630496	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7630502	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7634488	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7648325	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25453400-25460600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:25453600-25458200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:25454000-25462600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:25454400-25457400	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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