Variant report

Variant	rs148411466
Chromosome Location	chr6:34050497-34050498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34044767..34048120-chr6:34049441..34052801,3	K562	blood:
2	chr6:34046290..34048396-chr6:34049554..34051371,2	K562	blood:
3	chr6:33807979..33810907-chr6:34049317..34052125,2	MCF-7	breast:
4	chr6:34048142..34050744-chr6:34061539..34063734,2	K562	blood:
5	chr6:34042273..34043918-chr6:34048694..34051267,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv462901	chr6:33953646-34050917	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv602861	chr6:33953646-34050917	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
7	nsv885779	chr6:34046131-34103662	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv990009	chr6:34049768-34057654	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34025000-34101800	Weak transcription	Right Atrium	heart
2	chr6:34027400-34066400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:34044800-34052200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:34045200-34050800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:34045800-34065000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:34047000-34050600	Weak transcription	Fetal Brain Female	brain
7	chr6:34048800-34053000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:34049400-34052400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:34050200-34050800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
10	chr6:34050200-34051000	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:34050200-34051400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:34050200-34051600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:34050200-34052600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr6:34050200-34053400	Enhancers	Fetal Brain Male	brain
15	chr6:34050400-34050600	Enhancers	H9 Cell Line	embryonic stem cell
16	chr6:34050400-34051000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:34050400-34051000	Bivalent Enhancer	HSMMtube	muscle
18	chr6:34050400-34051200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:34050400-34051400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr6:34050400-34051800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr6:34050400-34053000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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