Variant report

Variant	rs148425039
Chromosome Location	chr8:131368214-131368215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:131354832..131358250-chr8:131366944..131369534,3	MCF-7	breast:
2	chr8:131367705..131370719-chr8:131454770..131456809,3	MCF-7	breast:
3	chr8:131308649..131310819-chr8:131367686..131370906,3	MCF-7	breast:
4	chr8:131354026..131357067-chr8:131366453..131369277,3	K562	blood:

Variant related genes	Relation type
ENSG00000153317	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv870148	chr8:131206342-131373989	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv612285	chr8:131367481-131371055	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131346400-131368800	Weak transcription	Fetal Intestine Small	intestine
2	chr8:131354400-131368800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:131354400-131368800	Weak transcription	Colonic Mucosa	Colon
4	chr8:131355400-131368400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:131355400-131369000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:131355600-131369400	Weak transcription	Hela-S3	cervix
7	chr8:131357000-131368400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr8:131358000-131369000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:131359000-131369000	Weak transcription	Esophagus	oesophagus
10	chr8:131359600-131368600	Weak transcription	Liver	Liver
11	chr8:131359800-131368800	Weak transcription	Fetal Lung	lung
12	chr8:131359800-131369000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr8:131359800-131369600	Weak transcription	Fetal Kidney	kidney
14	chr8:131360000-131368400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr8:131360000-131368800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr8:131360000-131369000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr8:131360000-131369000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr8:131360000-131369200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr8:131360000-131369400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr8:131360200-131369000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr8:131360600-131368400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr8:131360600-131369000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr8:131361200-131368600	Weak transcription	Colon Smooth Muscle	Colon
24	chr8:131361200-131368600	Weak transcription	Thymus	Thymus
25	chr8:131361400-131368400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr8:131361400-131368800	Weak transcription	Placenta	Placenta
27	chr8:131361400-131368800	Weak transcription	Fetal Thymus	thymus
28	chr8:131362400-131368400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr8:131362800-131369000	Weak transcription	Gastric	stomach
30	chr8:131362800-131369000	Weak transcription	Small Intestine	intestine
31	chr8:131363000-131368400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr8:131363200-131368600	Weak transcription	Fetal Stomach	stomach
33	chr8:131363200-131368800	Weak transcription	Psoas Muscle	Psoas
34	chr8:131363400-131368400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr8:131363400-131369000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr8:131363600-131368800	Weak transcription	Fetal Intestine Large	intestine
37	chr8:131364200-131368400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr8:131364400-131368800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr8:131364600-131368400	Weak transcription	Ovary	ovary
40	chr8:131364800-131368400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr8:131365200-131368400	Weak transcription	HMEC	breast
42	chr8:131365200-131368600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr8:131365400-131368400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr8:131366400-131368400	Strong transcription	A549	lung
45	chr8:131366400-131368600	Enhancers	Fetal Heart	heart
46	chr8:131366600-131368400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr8:131366600-131368800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr8:131366800-131368600	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr8:131366800-131368800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr8:131367000-131368400	Enhancers	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links