Variant report

Variant	rs148473183
Chromosome Location	chr1:92789018-92789019
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012864	chr1:92067100-92827761	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv535029	chr1:92067100-92827761	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv530438	chr1:92091957-92827760	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv530046	chr1:92277460-92799794	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv830592	chr1:92669282-92805629	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv870667	chr1:92697188-92813741	Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv871352	chr1:92761127-92807238	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
8	nsv870854	chr1:92765102-92807238	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv871387	chr1:92765102-92813741	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
10	esv3400141	chr1:92787714-92789662	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92765200-92791600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:92765200-92792000	Weak transcription	Aorta	Aorta
3	chr1:92765200-92792000	Weak transcription	Esophagus	oesophagus
4	chr1:92765600-92789600	Weak transcription	Psoas Muscle	Psoas
5	chr1:92765600-92791000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:92765600-92791600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:92765600-92791800	Weak transcription	Lung	lung
8	chr1:92765600-92791800	Weak transcription	Pancreas	Pancrea
9	chr1:92765600-92791800	Weak transcription	Right Ventricle	heart
10	chr1:92765600-92792000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:92765600-92792000	Weak transcription	Spleen	Spleen
12	chr1:92765800-92789200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:92765800-92791600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:92765800-92791800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr1:92765800-92791800	Weak transcription	Gastric	stomach
16	chr1:92765800-92850000	Weak transcription	Small Intestine	intestine
17	chr1:92766000-92792000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:92766400-92791600	Weak transcription	Brain Hippocampus Middle	brain
19	chr1:92771000-92791400	Weak transcription	NHEK	skin
20	chr1:92771800-92794800	Weak transcription	Brain Angular Gyrus	brain
21	chr1:92771800-92823800	Weak transcription	Colonic Mucosa	Colon
22	chr1:92772000-92789400	Weak transcription	Fetal Brain Male	brain
23	chr1:92773000-92800800	Weak transcription	NHDF-Ad	bronchial
24	chr1:92773800-92791800	Weak transcription	NHLF	lung
25	chr1:92774000-92791800	Weak transcription	Brain Anterior Caudate	brain
26	chr1:92774200-92789200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr1:92774200-92791800	Weak transcription	Brain Substantia Nigra	brain
28	chr1:92774200-92791800	Weak transcription	Thymus	Thymus
29	chr1:92774800-92789200	Weak transcription	HSMMtube	muscle
30	chr1:92776800-92789200	Weak transcription	GM12878-XiMat	blood
31	chr1:92777400-92789200	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr1:92778000-92791800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr1:92778000-92799200	Weak transcription	Hela-S3	cervix
34	chr1:92778200-92790000	Weak transcription	HMEC	breast
35	chr1:92779400-92789200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:92779400-92789400	Weak transcription	Fetal Brain Female	brain
37	chr1:92780600-92791600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr1:92781800-92792000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr1:92782200-92803400	Weak transcription	Stomach Mucosa	stomach
40	chr1:92782800-92789600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr1:92784400-92808200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr1:92784600-92791600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr1:92785000-92789200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr1:92785000-92791200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr1:92785000-92791200	Weak transcription	K562	blood
46	chr1:92785000-92792000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr1:92785200-92789200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr1:92785200-92793400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr1:92786200-92791800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr1:92786800-92789200	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links