Variant report

Variant	rs148491478
Chromosome Location	chr17:59824179-59824180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59822353..59824545-chr17:59851695..59854638,2	MCF-7	breast:
2	chr16:81478704..81480566-chr17:59823616..59825602,2	MCF-7	breast:
3	chr17:59757651..59759425-chr17:59822569..59825415,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136492	Chromatin interaction
ENSG00000153815	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv908673	chr17:59767501-59926645	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases
3	nsv908674	chr17:59800827-59899790	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
4	nsv575841	chr17:59812748-59914681	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
5	nsv575842	chr17:59812748-59927307	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
6	esv2489612	chr17:59823944-59825509	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59781600-59835400	Weak transcription	Hela-S3	cervix
2	chr17:59794400-59848200	Weak transcription	HUVEC	blood vessel
3	chr17:59804200-59847400	Weak transcription	K562	blood
4	chr17:59804600-59834200	Weak transcription	Osteobl	bone
5	chr17:59806200-59825600	Weak transcription	Thymus	Thymus
6	chr17:59807600-59838400	Weak transcription	Fetal Stomach	stomach
7	chr17:59811600-59825200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr17:59814000-59849000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr17:59815000-59839200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr17:59815600-59828200	Weak transcription	NHLF	lung
11	chr17:59815600-59836000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr17:59815600-59844200	Weak transcription	HMEC	breast
13	chr17:59815800-59834400	Weak transcription	HSMM	muscle
14	chr17:59815800-59843400	Weak transcription	NHEK	skin
15	chr17:59816800-59887800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr17:59819000-59842600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr17:59819400-59843600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr17:59819400-59848200	Weak transcription	Primary B cells from cord blood	blood
19	chr17:59820000-59824400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr17:59820000-59839200	Weak transcription	Fetal Muscle Leg	muscle
21	chr17:59820000-59841400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr17:59820000-59841400	Weak transcription	Ovary	ovary
23	chr17:59820000-59846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr17:59820200-59825200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr17:59820200-59825400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr17:59820200-59825400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr17:59820400-59825000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr17:59820400-59825200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr17:59820400-59835400	Weak transcription	Fetal Intestine Large	intestine
30	chr17:59820400-59840200	Weak transcription	Fetal Thymus	thymus
31	chr17:59820400-59877200	Weak transcription	NH-A	brain
32	chr17:59821400-59831600	Weak transcription	HepG2	liver
33	chr17:59821400-59834200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr17:59822800-59825000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr17:59823000-59824200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr17:59823000-59827000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr17:59823200-59825200	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr17:59823400-59824600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
39	chr17:59823400-59827600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr17:59823600-59824400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
41	chr17:59823600-59824800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr17:59823600-59826000	ZNF genes & repeats	Dnd41	blood
43	chr17:59823800-59824600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
44	chr17:59823800-59824800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr17:59823800-59827600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
46	chr17:59824000-59824200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
47	chr17:59824000-59824200	ZNF genes & repeats	Fetal Lung	lung
48	chr17:59824000-59824400	ZNF genes & repeats	Primary T cells from cord blood	blood
49	chr17:59824000-59824400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr17:59824000-59824400	ZNF genes & repeats	Fetal Heart	heart

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