Variant report

Variant	rs148518582
Chromosome Location	chr16:73080209-73080210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:73015896..73018125-chr16:73080034..73081873,2	MCF-7	breast:
2	chr16:72961643..72964004-chr16:73079315..73080843,2	MCF-7	breast:
3	chr16:73013583..73015473-chr16:73077986..73080970,2	MCF-7	breast:
4	chr16:73079572..73082318-chr20:47893327..47894855,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124201	Chromatin interaction
ENSG00000177410	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906898	chr16:73017684-73128146	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv827730	chr16:73066699-73115642	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv827732	chr16:73069343-73116594	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv827733	chr16:73075114-73103721	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	esv1819498	chr16:73079212-73092845	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:73067800-73081400	Weak transcription	Small Intestine	intestine
2	chr16:73070400-73080400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr16:73071200-73081200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
4	chr16:73071600-73081200	Weak transcription	Esophagus	oesophagus
5	chr16:73072400-73080800	Weak transcription	Spleen	Spleen
6	chr16:73074800-73080600	Weak transcription	HMEC	breast
7	chr16:73075000-73080800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr16:73076000-73080600	Enhancers	Psoas Muscle	Psoas
9	chr16:73076000-73081000	Enhancers	Placenta	Placenta
10	chr16:73076200-73081000	Enhancers	Fetal Muscle Leg	muscle
11	chr16:73076200-73081200	Enhancers	Placenta Amnion	Placenta Amnion
12	chr16:73076600-73080800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr16:73076600-73081000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr16:73076600-73081200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr16:73077000-73080800	Enhancers	Fetal Kidney	kidney
16	chr16:73077000-73081200	Enhancers	Fetal Heart	heart
17	chr16:73077200-73081400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr16:73077400-73080600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr16:73077600-73080800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr16:73077800-73081200	Weak transcription	Colonic Mucosa	Colon
21	chr16:73078400-73080400	Enhancers	Colon Smooth Muscle	Colon
22	chr16:73078400-73080600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr16:73078400-73080800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
24	chr16:73078400-73081000	Enhancers	Right Atrium	heart
25	chr16:73078600-73080800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr16:73078600-73080800	Weak transcription	Brain Angular Gyrus	brain
27	chr16:73078600-73080800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr16:73078600-73081200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr16:73079000-73081200	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr16:73079200-73080800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr16:73079200-73081200	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr16:73079400-73080400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr16:73079400-73080400	Weak transcription	Brain Substantia Nigra	brain
34	chr16:73079400-73081400	Weak transcription	Left Ventricle	heart
35	chr16:73079800-73080400	Enhancers	Fetal Intestine Small	intestine
36	chr16:73079800-73080800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
37	chr16:73079800-73081000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr16:73079800-73081000	Enhancers	Fetal Intestine Large	intestine
39	chr16:73079800-73081000	Flanking Active TSS	HSMMtube	muscle
40	chr16:73079800-73081200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
41	chr16:73079800-73081200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr16:73079800-73081200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
43	chr16:73079800-73081200	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr16:73079800-73081200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr16:73079800-73081400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
46	chr16:73079800-73081400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr16:73079800-73081600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
48	chr16:73079800-73081800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr16:73079800-73081800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr16:73079800-73081800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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