Variant report

Variant	rs148522021
Chromosome Location	chr15:50756934-50756935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:50714167..50717142-chr15:50755820..50757531,2	MCF-7	breast:
2	chr15:50645594..50649830-chr15:50754186..50757976,9	MCF-7	breast:
3	chr15:50645851..50647649-chr15:50756686..50758653,2	K562	blood:
4	chr15:50643045..50650563-chr15:50756489..50761004,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000244879	Chromatin interaction
ENSG00000138592	Chromatin interaction
ENSG00000104064	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv948579	chr15:50645530-51045564	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv524613	chr15:50656449-50868779	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv904210	chr15:50702058-50786024	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1040717	chr15:50715572-50846521	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv1053966	chr15:50715572-51133186	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
7	nsv542383	chr15:50715572-51133186	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
8	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
10	nsv1049576	chr15:50744781-50843495	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
11	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
12	nsv1051990	chr15:50745814-51133186	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
13	nsv974576	chr15:50756726-50761869	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50717600-50764600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:50717600-50774800	Weak transcription	Stomach Mucosa	stomach
3	chr15:50717800-50758800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:50718000-50757000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:50722800-50764600	Weak transcription	Esophagus	oesophagus
6	chr15:50724800-50764600	Weak transcription	Pancreas	Pancrea
7	chr15:50733400-50785200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:50733600-50758200	Weak transcription	HMEC	breast
9	chr15:50733600-50758800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:50734000-50763200	Weak transcription	Brain Anterior Caudate	brain
11	chr15:50734000-50776400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:50734000-50785600	Weak transcription	Fetal Brain Male	brain
13	chr15:50734600-50772600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:50735400-50764600	Weak transcription	Psoas Muscle	Psoas
15	chr15:50735600-50773000	Weak transcription	Brain Substantia Nigra	brain
16	chr15:50736200-50758600	Weak transcription	Right Ventricle	heart
17	chr15:50737200-50764800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr15:50738200-50796800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:50740200-50777200	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr15:50740800-50770200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr15:50741800-50797000	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr15:50742400-50760000	Strong transcription	Duodenum Mucosa	Duodenum
23	chr15:50742600-50760000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:50744000-50782400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr15:50744000-50789000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr15:50745400-50771200	Weak transcription	NHLF	lung
27	chr15:50745600-50773800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr15:50746200-50761000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:50746200-50794400	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr15:50746400-50767200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr15:50747000-50759000	Weak transcription	Fetal Kidney	kidney
32	chr15:50747600-50764600	Weak transcription	Aorta	Aorta
33	chr15:50747600-50764600	Weak transcription	Gastric	stomach
34	chr15:50747800-50763600	Weak transcription	Brain Angular Gyrus	brain
35	chr15:50747800-50763600	Weak transcription	Brain Germinal Matrix	brain
36	chr15:50747800-50772800	Weak transcription	Brain Hippocampus Middle	brain
37	chr15:50748000-50768200	Weak transcription	HUVEC	blood vessel
38	chr15:50748200-50770800	Weak transcription	Fetal Brain Female	brain
39	chr15:50748400-50773000	Weak transcription	Colonic Mucosa	Colon
40	chr15:50748400-50782400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr15:50748400-50785200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:50749200-50757400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr15:50750000-50794400	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr15:50750200-50759600	Strong transcription	HSMM	muscle
45	chr15:50750400-50757000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr15:50750400-50777000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:50750600-50766600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr15:50750800-50775200	Strong transcription	Fetal Intestine Large	intestine
49	chr15:50751000-50760000	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr15:50751000-50779000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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