Variant report

Variant	rs1485388
Chromosome Location	chr3:23078551-23078552
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23059562..23061328-chr3:23078104..23079690,2	MCF-7	breast:
2	chr3:23076916..23078898-chr3:23091212..23094120,2	MCF-7	breast:

rs_ID	r²[population]
rs57902782	0.82[AFR][1000 genomes]
rs59611274	0.91[AFR][1000 genomes]
rs60136374	1.00[AFR][1000 genomes]
rs60524065	1.00[AFR][1000 genomes]
rs61263909	0.81[AFR][1000 genomes]

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23071600-23080400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr3:23077200-23078600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr3:23077400-23079000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:23077400-23081400	Enhancers	Fetal Lung	lung
5	chr3:23077600-23078600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:23077600-23079200	Enhancers	Primary hematopoietic stem cells	blood
7	chr3:23077600-23079200	Enhancers	Fetal Heart	heart
8	chr3:23077800-23079000	Enhancers	Adipose Nuclei	Adipose
9	chr3:23077800-23079000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr3:23077800-23079000	Enhancers	NHLF	lung
11	chr3:23077800-23080000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr3:23077800-23080400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:23077800-23080600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:23077800-23081000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:23078000-23080200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:23078000-23080600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:23078000-23082800	Weak transcription	Esophagus	oesophagus
18	chr3:23078000-23083400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr3:23078000-23083400	Weak transcription	HMEC	breast
20	chr3:23078000-23083800	Weak transcription	Left Ventricle	heart
21	chr3:23078200-23078600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr3:23078200-23078600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr3:23078200-23078600	Enhancers	HSMMtube	muscle
24	chr3:23078200-23079000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:23078400-23078800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:23078400-23083400	Weak transcription	NHEK	skin

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