Variant report

Variant	rs148545938
Chromosome Location	chr19:35842449-35842450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:35738586..35740249-chr19:35841328..35842901,2	MCF-7	breast:
2	chr19:35738565..35740290-chr19:35840353..35842474,2	MCF-7	breast:
3	chr19:35768943..35770953-chr19:35842158..35843798,2	K562	blood:
4	chr19:35842337..35844746-chr19:35937975..35940888,2	MCF-7	breast:
5	chr19:35759344..35762217-chr19:35841314..35843989,4	MCF-7	breast:
6	chr19:35758781..35763844-chr19:35840402..35843897,5	K562	blood:

Variant related genes	Relation type
ENSG00000105699	Chromatin interaction
ENSG00000126262	Chromatin interaction
ENSG00000105698	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv510765	chr19:35708226-35890668	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	esv2758497	chr19:35711078-35887113	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	esv2758758	chr19:35711078-35887113	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
8	esv1828194	chr19:35812566-35865695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1067129	chr19:35827036-35849310	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
10	nsv173	chr19:35837405-35866835	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv2471	chr19:35837405-35903115	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	esv3399851	chr19:35841723-35854402	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35817600-35844000	Weak transcription	Brain Angular Gyrus	brain
2	chr19:35836800-35843800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr19:35836800-35848000	Weak transcription	Brain Substantia Nigra	brain
4	chr19:35837600-35843600	Weak transcription	Brain Anterior Caudate	brain
5	chr19:35838200-35849200	Weak transcription	Brain Hippocampus Middle	brain
6	chr19:35838600-35843600	Weak transcription	K562	blood
7	chr19:35839000-35842600	Enhancers	Primary B cells from cord blood	blood
8	chr19:35839000-35843600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr19:35839000-35843600	Enhancers	GM12878-XiMat	blood
10	chr19:35839200-35843600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr19:35839200-35843600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr19:35839200-35843600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr19:35839200-35843600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr19:35839200-35843600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr19:35839200-35843800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr19:35839200-35848600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr19:35839200-35848800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr19:35839600-35843600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr19:35839800-35843600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr19:35840200-35843400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr19:35840400-35843600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr19:35840600-35843400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr19:35840600-35843600	Weak transcription	HepG2	liver
24	chr19:35840800-35846200	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr19:35840800-35848400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr19:35841000-35843200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr19:35841200-35843200	Weak transcription	Spleen	Spleen
28	chr19:35841200-35843600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr19:35841600-35843600	Weak transcription	Ovary	ovary
30	chr19:35841800-35842600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr19:35842200-35843400	Weak transcription	Primary B cells from peripheral blood	blood

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