Variant report

Variant	rs1485718
Chromosome Location	chr3:59763371-59763372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1485715	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17061186	0.86[EUR][1000 genomes]
rs17302746	1.00[CEU][hapmap]
rs1797563	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4679609	0.89[ASN][1000 genomes]
rs4679611	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4679623	1.00[CEU][hapmap]
rs493783	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs521388	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56351611	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs780345	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9813457	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9823629	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1003387	chr3:59756364-59831340	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv460562	chr3:59760118-59826778	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv590381	chr3:59760118-59826778	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59756800-59763600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:59759400-59765200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr3:59760400-59776000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr3:59761000-59764200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr3:59761000-59772400	Weak transcription	Fetal Brain Male	brain
6	chr3:59761200-59768200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:59761800-59764800	Enhancers	Primary hematopoietic stem cells	blood
8	chr3:59761800-59765200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:59762000-59770000	Weak transcription	Fetal Thymus	thymus
10	chr3:59762400-59763800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:59762400-59764200	Enhancers	Primary T cells from cord blood	blood
12	chr3:59762400-59769600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr3:59762800-59763600	Enhancers	Primary B cells from cord blood	blood
14	chr3:59762800-59763600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr3:59762800-59764600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:59763000-59763400	Weak transcription	Dnd41	blood
17	chr3:59763000-59764400	Enhancers	Primary B cells from peripheral blood	blood
18	chr3:59763200-59763400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr3:59763200-59764200	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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