Variant report

Variant	rs148726230
Chromosome Location	chr4:30823837-30823838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:30821360..30824099-chr4:30824392..30825995,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv499039	chr4:30819213-30830142	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30795800-30824000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:30813800-30835800	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:30817600-30824000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:30820400-30824600	Weak transcription	Aorta	Aorta
5	chr4:30822800-30824400	Enhancers	Fetal Heart	heart
6	chr4:30823000-30824000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:30823000-30824200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:30823000-30824200	Enhancers	HSMMtube	muscle
9	chr4:30823000-30825000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:30823200-30824000	Flanking Active TSS	NH-A	brain
11	chr4:30823200-30824200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:30823200-30824200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:30823200-30825200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:30823400-30824200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr4:30823400-30824200	Enhancers	NHEK	skin
16	chr4:30823600-30824000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr4:30823600-30824000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:30823600-30824000	Active TSS	Right Ventricle	heart
19	chr4:30823600-30824200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr4:30823600-30824200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:30823600-30824200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr4:30823600-30824200	Active TSS	Stomach Smooth Muscle	stomach
23	chr4:30823800-30824200	Flanking Active TSS	Hela-S3	cervix
24	chr4:30823800-30824200	Flanking Active TSS	HSMM	muscle
25	chr4:30823800-30826600	Weak transcription	HUVEC	blood vessel
26	chr4:30823800-30827000	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links