Variant report

Variant	rs1487562
Chromosome Location	chr10:45928822-45928823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45920912..45922715-chr10:45926382..45929027,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1051713	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs1059696	0.89[EUR][1000 genomes]
rs11239532	0.94[CEU][hapmap];0.82[GIH][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs11239534	0.81[CEU][hapmap]
rs11239572	0.81[CEU][hapmap]
rs12247163	0.91[EUR][1000 genomes]
rs12765320	0.94[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap]
rs17157771	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2082109	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2082110	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2082111	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2310783	0.87[EUR][1000 genomes]
rs3780908	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3891524	0.87[EUR][1000 genomes]
rs56145077	0.87[EUR][1000 genomes]
rs61854092	0.90[EUR][1000 genomes]
rs61854093	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7068039	0.91[EUR][1000 genomes]
rs7080474	0.87[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7080977	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73283198	0.83[ASN][1000 genomes]
rs74130823	0.83[EUR][1000 genomes]
rs752059	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv895107	chr10:45850300-45953767	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv895110	chr10:45912771-45953767	Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1487562	ANUBL1	cis	cerebellum	SCAN
rs1487562	RBP3	cis	parietal	SCAN
rs1487562	ANUBL1	cis	parietal	SCAN
rs1487562	ALOX5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45916600-45949200	Weak transcription	Gastric	stomach
2	chr10:45918600-45929200	Strong transcription	Primary B cells from peripheral blood	blood
3	chr10:45921400-45930800	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:45921400-45931600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:45921600-45930400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr10:45921800-45933800	Weak transcription	Esophagus	oesophagus
7	chr10:45925000-45929600	Weak transcription	Spleen	Spleen
8	chr10:45925000-45940600	Weak transcription	Fetal Intestine Small	intestine
9	chr10:45925000-45949200	Weak transcription	Lung	lung
10	chr10:45925600-45929200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:45925800-45936200	Weak transcription	Placenta	Placenta
12	chr10:45927800-45930800	Strong transcription	Primary B cells from cord blood	blood
13	chr10:45928000-45929400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:45928000-45929800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr10:45928200-45929200	Enhancers	GM12878-XiMat	blood
16	chr10:45928200-45929600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr10:45928200-45930400	Enhancers	K562	blood
18	chr10:45928400-45929200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr10:45928400-45929800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr10:45928400-45929800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr10:45928400-45929800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:45928400-45929800	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr10:45928400-45930000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr10:45928400-45930000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr10:45928400-45930200	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr10:45928400-45930200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr10:45928400-45930200	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr10:45928600-45929000	Enhancers	H9 Cell Line	embryonic stem cell
29	chr10:45928600-45929000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr10:45928600-45929200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:45928600-45929600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr10:45928600-45930000	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr10:45928600-45930000	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr10:45928600-45930200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr10:45928600-45930200	Enhancers	Pancreas	Pancrea
36	chr10:45928600-45930400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr10:45928600-45930600	Enhancers	Primary T cells fromperipheralblood	blood
38	chr10:45928600-45930600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr10:45928600-45930800	Enhancers	Fetal Thymus	thymus
40	chr10:45928800-45929000	Enhancers	Small Intestine	intestine
41	chr10:45928800-45929200	Enhancers	HepG2	liver
42	chr10:45928800-45930200	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr10:45928800-45930600	Enhancers	Thymus	Thymus
44	chr10:45928800-45951000	Weak transcription	Duodenum Mucosa	Duodenum

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