Variant report

Variant	rs1487670
Chromosome Location	chr8:90574068-90574069
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:90573142..90574734-chr8:90574796..90577742,2	MCF-7	breast:
2	chr8:90570319..90572702-chr8:90573054..90574779,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10081423	0.94[EUR][1000 genomes]
rs10081569	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10087963	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10091099	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10092477	0.88[EUR][1000 genomes]
rs10093582	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10095948	0.87[EUR][1000 genomes]
rs10103261	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10103935	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10104048	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10956130	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10956137	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11775122	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11990948	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11992806	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11996000	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12549527	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1386648	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1487678	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1510465	0.91[EUR][1000 genomes]
rs1546745	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1601766	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1601767	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17540415	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17840661	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1996853	0.86[AMR][1000 genomes]
rs28678004	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs311638	0.88[EUR][1000 genomes]
rs34871636	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35261547	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4563939	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4571769	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4576465	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4960972	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4960973	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4961147	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56135833	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6981677	0.88[EUR][1000 genomes]
rs6986107	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6995460	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6999527	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs719239	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7844045	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9297665	0.87[AMR][1000 genomes]
rs9297679	0.88[EUR][1000 genomes]
rs9987398	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	esv2761173	chr8:90404592-90592009	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1027327	chr8:90426338-90585108	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1028969	chr8:90475194-90650295	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv528988	chr8:90475375-90608246	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv611720	chr8:90476925-90608246	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv427825	chr8:90495139-90653696	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv527244	chr8:90532927-90589630	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv870380	chr8:90546585-90720182	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	esv2761447	chr8:90553156-90576196	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1028026	chr8:90553930-90678631	Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv982109	chr8:90556188-90703631	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	nsv1026523	chr8:90558935-90722580	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	nsv1019986	chr8:90570309-90628648	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90572400-90574400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:90572400-90574800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:90572600-90574800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:90572800-90574600	Weak transcription	NHEK	skin
5	chr8:90572800-90579800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:90573600-90574200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:90573600-90576600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:90573800-90574800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:90573800-90575800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:90573800-90576400	Enhancers	HMEC	breast

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