Variant report

Variant	rs148779992
Chromosome Location	chr2:127451361-127451362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002265	chr2:127029745-127733458	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535919	chr2:127029745-127733458	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv583011	chr2:127386211-127489031	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv875007	chr2:127426697-127454230	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv965826	chr2:127445780-127453618	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2429496	chr2:127446841-127451443	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv875009	chr2:127447393-127452219	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3422935	chr2:127447701-127451439	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv875010	chr2:127447829-127452764	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3528056	chr2:127448510-127455016	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3528057	chr2:127448510-127455016	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3357673	chr2:127448720-127452655	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3423852	chr2:127448933-127452547	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv583014	chr2:127450911-127455669	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:127422200-127453400	Weak transcription	Colonic Mucosa	Colon
2	chr2:127433600-127451400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:127433800-127452600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr2:127434200-127457200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:127434800-127453000	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:127434800-127453200	Weak transcription	Placenta	Placenta
7	chr2:127435200-127457400	Weak transcription	Fetal Kidney	kidney
8	chr2:127435400-127452800	Weak transcription	Fetal Intestine Large	intestine
9	chr2:127439800-127457600	Weak transcription	Brain Hippocampus Middle	brain
10	chr2:127442000-127456800	Weak transcription	Osteobl	bone
11	chr2:127443400-127452600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr2:127443600-127458800	Strong transcription	Primary T cells from cord blood	blood
13	chr2:127444000-127456400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr2:127444000-127458200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr2:127444200-127451400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr2:127445200-127456000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:127445400-127451400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr2:127445400-127456400	Strong transcription	Stomach Smooth Muscle	stomach
19	chr2:127446000-127451400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
20	chr2:127446000-127451400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr2:127446000-127451600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr2:127446000-127451800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr2:127446000-127454600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr2:127446400-127453400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr2:127446400-127456200	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr2:127446400-127456200	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr2:127446600-127456600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr2:127446800-127458200	Weak transcription	NHDF-Ad	bronchial
29	chr2:127447400-127455800	Strong transcription	Ovary	ovary
30	chr2:127447400-127456200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:127447400-127457000	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr2:127447600-127456000	Strong transcription	Fetal Lung	lung
33	chr2:127447600-127456200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr2:127447600-127456200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr2:127447600-127456200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr2:127447600-127456400	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr2:127447600-127456800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr2:127448000-127451400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr2:127448000-127452400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr2:127448200-127456400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr2:127448400-127456200	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr2:127448600-127455200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr2:127449000-127452600	Weak transcription	Gastric	stomach
44	chr2:127449000-127455800	Strong transcription	K562	blood
45	chr2:127449400-127451400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
46	chr2:127449600-127451400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr2:127449600-127456000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr2:127449800-127451600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
49	chr2:127449800-127456600	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr2:127450000-127453600	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links