Variant report

Variant	rs148809988
Chromosome Location	chr7:2883502-2883503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:149858014..149859677-chr7:2882924..2885730,2	MCF-7	breast:
2	chr7:2869377..2877481-chr7:2880306..2885399,15	MCF-7	breast:
3	chr7:2801788..2804432-chr7:2882018..2884117,3	K562	blood:
4	chr7:2726313..2732670-chr7:2878755..2886203,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174945	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000146535	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000231357	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015700	chr7:2753965-2945848	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1018162	chr7:2817460-2891181	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv538655	chr7:2817460-2891181	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv887313	chr7:2875420-2927120	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv887314	chr7:2875420-2944187	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	esv3333602	chr7:2882776-2885274	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2881800-2883600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr7:2882000-2883600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:2882000-2884400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:2882000-2884600	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr7:2882200-2883600	Flanking Active TSS	Dnd41	blood
6	chr7:2882400-2883600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr7:2882400-2884400	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr7:2882400-2884400	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr7:2882400-2884800	Active TSS	NHLF	lung
10	chr7:2882400-2885000	Active TSS	A549	lung
11	chr7:2882600-2883600	Flanking Active TSS	Colonic Mucosa	Colon
12	chr7:2882600-2884400	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr7:2882600-2884400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr7:2882600-2884400	Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr7:2882600-2884400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:2882600-2884400	Active TSS	HSMMtube	muscle
17	chr7:2882600-2884600	Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr7:2882600-2884600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:2882600-2884800	Active TSS	HSMM	muscle
20	chr7:2882800-2883600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr7:2882800-2883600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr7:2882800-2883800	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr7:2882800-2884400	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr7:2882800-2884800	Active TSS	H9 Cell Line	embryonic stem cell
25	chr7:2883000-2883600	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr7:2883000-2883800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
27	chr7:2883000-2884400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:2883000-2884400	Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr7:2883000-2884400	Active TSS	Muscle Satellite Cultured Cells	--
30	chr7:2883000-2884400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr7:2883000-2884400	Active TSS	Brain Substantia Nigra	brain
32	chr7:2883000-2884400	Active TSS	Fetal Kidney	kidney
33	chr7:2883000-2884400	Active TSS	Psoas Muscle	Psoas
34	chr7:2883000-2884600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr7:2883000-2884600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr7:2883000-2884600	Active TSS	NHDF-Ad	bronchial
37	chr7:2883000-2884800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:2883000-2884800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr7:2883200-2883600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
40	chr7:2883200-2883600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
41	chr7:2883200-2883600	Flanking Active TSS	Liver	Liver
42	chr7:2883200-2883600	Flanking Active TSS	Stomach Smooth Muscle	stomach
43	chr7:2883200-2883800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr7:2883200-2884000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr7:2883200-2884000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr7:2883200-2884200	Active TSS	HUVEC	blood vessel
47	chr7:2883200-2884400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr7:2883200-2884400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr7:2883200-2884400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr7:2883200-2884400	Active TSS	Breast Myoepithelial Primary Cells	Breast

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