Variant report

Variant	rs148815098
Chromosome Location	chr15:74698334-74698335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74681969..74683512-chr15:74696036..74698830,3	K562	blood:
2	chr15:74675668..74677716-chr15:74696370..74698662,2	MCF-7	breast:
3	chr15:74688657..74691908-chr15:74695060..74698552,3	K562	blood:
4	chr15:74698106..74700226-chr15:74701422..74703511,2	MCF-7	breast:
5	chr15:74684231..74686824-chr15:74694888..74698763,3	K562	blood:
6	chr15:74692551..74696987-chr15:74697401..74700610,5	K562	blood:
7	chr15:74696752..74700266-chr15:74701872..74704964,3	K562	blood:

Variant related genes	Relation type
ENSG00000138623	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904353	chr15:74697084-74716609	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904354	chr15:74697084-74722924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv904355	chr15:74697084-74728149	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
7	nsv904356	chr15:74697084-74729603	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74685400-74699400	Weak transcription	Brain Substantia Nigra	brain
2	chr15:74688000-74699000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:74689400-74702400	Weak transcription	Gastric	stomach
4	chr15:74692000-74701200	Enhancers	Spleen	Spleen
5	chr15:74693600-74699200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr15:74693600-74701600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr15:74693800-74698600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:74693800-74698800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:74693800-74699000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:74693800-74700000	Weak transcription	Esophagus	oesophagus
11	chr15:74694000-74698800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:74694000-74699000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr15:74694000-74699000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr15:74694000-74699200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr15:74694000-74699400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:74694200-74699000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:74694200-74699000	Weak transcription	Hela-S3	cervix
18	chr15:74694400-74699000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:74695800-74699200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:74696000-74698800	Weak transcription	NHEK	skin
21	chr15:74696000-74699200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:74696000-74700400	Enhancers	Ovary	ovary
23	chr15:74696200-74698600	Weak transcription	HMEC	breast
24	chr15:74696200-74699000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:74696200-74700000	Enhancers	Primary B cells from peripheral blood	blood
26	chr15:74696200-74702600	Weak transcription	Lung	lung
27	chr15:74696200-74710400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:74696200-74711400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr15:74696200-74712600	Weak transcription	Right Atrium	heart
30	chr15:74696400-74699000	Weak transcription	Brain Angular Gyrus	brain
31	chr15:74696400-74700600	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr15:74696400-74702400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr15:74696400-74707000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr15:74696400-74712200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr15:74696600-74698800	Strong transcription	Placenta	Placenta
36	chr15:74696600-74699800	Enhancers	Fetal Thymus	thymus
37	chr15:74696600-74703600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr15:74696600-74706200	Weak transcription	Primary T cells from cord blood	blood
39	chr15:74696800-74698800	Weak transcription	HSMMtube	muscle
40	chr15:74696800-74699200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr15:74696800-74699200	Weak transcription	Brain Anterior Caudate	brain
42	chr15:74696800-74699200	Weak transcription	Brain Hippocampus Middle	brain
43	chr15:74696800-74699400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr15:74696800-74702600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr15:74696800-74709400	Weak transcription	Left Ventricle	heart
46	chr15:74697000-74699000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr15:74697000-74699000	Weak transcription	Fetal Stomach	stomach
48	chr15:74697000-74699200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr15:74697000-74699200	Weak transcription	Fetal Brain Female	brain
50	chr15:74697000-74701200	Weak transcription	Thymus	Thymus

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