The 2.0 version of rSNPBase

Variant report

Variant rs148823840
Chromosome Location chr20:16532051-16532052
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:33 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16508400-16536800 Weak transcription Stomach Smooth Muscle stomach
2 chr20:16509200-16553000 Weak transcription Primary T cells from cord blood blood
3 chr20:16511600-16549000 Weak transcription Colonic Mucosa Colon
4 chr20:16517800-16534200 Weak transcription Esophagus oesophagus
5 chr20:16518200-16535800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
6 chr20:16518800-16534000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr20:16520200-16534400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr20:16520400-16533800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr20:16520400-16534800 Weak transcription Fetal Intestine Small intestine
10 chr20:16522200-16533400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
11 chr20:16522800-16532400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr20:16522800-16533800 Weak transcription Right Ventricle heart
13 chr20:16522800-16536800 Weak transcription Aorta Aorta
14 chr20:16523000-16533800 Weak transcription Brain Anterior Caudate brain
15 chr20:16523400-16532600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr20:16523400-16535400 Weak transcription Left Ventricle heart
17 chr20:16523800-16532400 Weak transcription Ovary ovary
18 chr20:16524000-16533800 Weak transcription Small Intestine intestine
19 chr20:16528400-16532400 Weak transcription Brain Angular Gyrus brain
20 chr20:16528600-16532400 Weak transcription Psoas Muscle Psoas
21 chr20:16528600-16534400 Weak transcription Gastric stomach
22 chr20:16529000-16533800 Weak transcription Spleen Spleen
23 chr20:16529200-16532600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr20:16529200-16534400 Weak transcription Pancreas Pancrea
25 chr20:16529400-16532400 Weak transcription Lung lung
26 chr20:16529400-16534000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr20:16530200-16536400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr20:16530400-16536400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
29 chr20:16532000-16532800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr20:16532000-16533200 Enhancers Skeletal Muscle Female skeletal muscle
31 chr20:16532000-16533400 Enhancers Fetal Thymus thymus
32 chr20:16532000-16534000 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr20:16532000-16534000 Enhancers Fetal Adrenal Gland Adrenal Gland

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Last update: Aug 31, 2015