Variant report

Variant	rs148860103
Chromosome Location	chr7:107210863-107210864
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:107210820-107210970	HBMEC	blood vessel:	n/a	n/a
2	CTCF	chr7:107210861-107210962	MCF-7	breast:	n/a	n/a
3	CTCF	chr7:107210860-107211010	HepG2	liver:	n/a	n/a
4	CTCF	chr7:107210820-107210970	NHEK	skin:	n/a	n/a
5	MYC	chr7:107210848-107210970	MCF-7	breast:	n/a	n/a
6	CTCF	chr7:107210740-107210890	GM12871	blood:	n/a	n/a
7	CTCF	chr7:107210860-107211010	Caco-2	colon:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:107209715..107211538-chr7:107214457..107216684,2	MCF-7	breast:
2	chr7:107202798..107206022-chr7:107208738..107213225,6	MCF-7	breast:
3	chr7:107210647..107213147-chr7:107219031..107221159,5	MCF-7	breast:

No data

Variant related genes	Relation type
DUS4L	TF binding region
ENSG00000272854	Chromatin interaction
ENSG00000164597	Chromatin interaction
ENSG00000075790	Chromatin interaction
ENSG00000105865	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv482365	chr7:107122401-107271861	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv608074	chr7:107179131-107260856	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv888940	chr7:107210383-107229618	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107205000-107219600	Weak transcription	Pancreas	Pancrea
2	chr7:107205000-107220000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:107205000-107220000	Weak transcription	Gastric	stomach
4	chr7:107205000-107220200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:107205000-107220200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:107205200-107219600	Weak transcription	Esophagus	oesophagus
7	chr7:107205200-107219600	Weak transcription	Right Ventricle	heart
8	chr7:107205200-107220000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:107205200-107220000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:107205200-107220000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:107205200-107220000	Weak transcription	Lung	lung
12	chr7:107205200-107220000	Weak transcription	Psoas Muscle	Psoas
13	chr7:107205400-107211800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr7:107205400-107219800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr7:107205400-107220000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr7:107205400-107220000	Weak transcription	Colonic Mucosa	Colon
17	chr7:107205400-107220000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr7:107205600-107211600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr7:107205600-107211600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr7:107205600-107211800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr7:107205600-107211800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr7:107205600-107214000	Weak transcription	Small Intestine	intestine
23	chr7:107205600-107215200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:107205600-107215400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:107205600-107215400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr7:107205600-107219600	Weak transcription	Aorta	Aorta
27	chr7:107205600-107219600	Weak transcription	Fetal Stomach	stomach
28	chr7:107205600-107219600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr7:107205600-107219800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr7:107205600-107220000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr7:107205600-107220000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr7:107205600-107220000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr7:107205600-107220000	Weak transcription	Brain Angular Gyrus	brain
34	chr7:107205600-107220000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr7:107205600-107220000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr7:107205600-107220000	Weak transcription	Brain Substantia Nigra	brain
37	chr7:107205600-107220000	Weak transcription	Fetal Kidney	kidney
38	chr7:107205600-107220000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr7:107205600-107220000	Weak transcription	HSMMtube	muscle
40	chr7:107205800-107211000	Weak transcription	Fetal Lung	lung
41	chr7:107205800-107219600	Weak transcription	Colon Smooth Muscle	Colon
42	chr7:107205800-107219800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr7:107205800-107219800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr7:107205800-107219800	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr7:107205800-107220000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr7:107205800-107220000	Weak transcription	Brain Anterior Caudate	brain
47	chr7:107205800-107220000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr7:107205800-107220000	Weak transcription	Fetal Brain Male	brain
49	chr7:107206000-107211800	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr7:107206000-107212000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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