Variant report

Variant	rs148892999
Chromosome Location	chr6:69488270-69488271
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:69347653..69349333-chr6:69488038..69488893,9	MCF-7	breast:
2	chr6:69282204..69283004-chr6:69488215..69489132,4	MCF-7	breast:
3	chr6:69450619..69452838-chr6:69487007..69488538,2	K562	blood:
4	chr6:69355188..69356834-chr6:69487220..69489411,2	MCF-7	breast:
5	chr6:69347821..69348854-chr6:69488207..69489105,5	MCF-7	breast:
6	chr6:69281088..69283265-chr6:69488145..69489862,2	K562	blood:
7	chr6:69347891..69348910-chr6:69488069..69489147,9	K562	blood:
8	chr6:69282574..69283109-chr6:69488255..69488898,2	K562	blood:
9	chr6:69449624..69452933-chr6:69485444..69489658,4	K562	blood:
10	chr6:69053685..69054306-chr6:69488036..69488952,2	MCF-7	breast:

No data

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69484800-69490000	Enhancers	Fetal Brain Female	brain
2	chr6:69485000-69490400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:69485600-69488400	Weak transcription	K562	blood
4	chr6:69486200-69489600	Enhancers	Fetal Lung	lung
5	chr6:69487600-69488400	Flanking Active TSS	Brain Anterior Caudate	brain
6	chr6:69487600-69488800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:69487600-69488800	Active TSS	Brain Substantia Nigra	brain
8	chr6:69487600-69489000	Enhancers	Fetal Heart	heart
9	chr6:69487600-69489200	Active TSS	Brain Hippocampus Middle	brain
10	chr6:69487600-69489400	Enhancers	Fetal Stomach	stomach
11	chr6:69487600-69491200	Enhancers	Brain Germinal Matrix	brain
12	chr6:69487800-69488400	Flanking Active TSS	Brain Angular Gyrus	brain
13	chr6:69487800-69488600	Enhancers	NHDF-Ad	bronchial
14	chr6:69487800-69490400	Enhancers	Fetal Brain Male	brain
15	chr6:69487800-69490600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:69487800-69490600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:69488000-69488600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr6:69488000-69489200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:69488000-69489200	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr6:69488200-69488600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:69488200-69489200	Active TSS	Brain Cingulate Gyrus	brain
22	chr6:69488200-69489200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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