Variant report

Variant	rs148894708
Chromosome Location	chr1:94513314-94513315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871172	chr1:94504545-94535546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv871057	chr1:94513142-94577286	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94505600-94514200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:94505800-94523600	Weak transcription	Psoas Muscle	Psoas
3	chr1:94508800-94513600	Enhancers	HUVEC	blood vessel
4	chr1:94509600-94516800	Enhancers	Fetal Muscle Leg	muscle
5	chr1:94509800-94514800	Enhancers	Placenta	Placenta
6	chr1:94509800-94515800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:94509800-94516800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr1:94510000-94514600	Enhancers	Left Ventricle	heart
9	chr1:94510000-94517400	Enhancers	NHDF-Ad	bronchial
10	chr1:94510400-94515200	Weak transcription	Fetal Lung	lung
11	chr1:94511000-94513800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:94511200-94513800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr1:94511600-94513400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr1:94511600-94513400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:94511600-94513600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr1:94511600-94513600	Weak transcription	Aorta	Aorta
17	chr1:94511600-94513800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr1:94511600-94513800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr1:94511600-94513800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:94511600-94513800	Enhancers	Fetal Muscle Trunk	muscle
21	chr1:94511600-94514000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr1:94511600-94514000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr1:94511600-94514000	Weak transcription	Pancreas	Pancrea
24	chr1:94511600-94514200	Weak transcription	HSMMtube	muscle
25	chr1:94511600-94514400	Weak transcription	Fetal Intestine Small	intestine
26	chr1:94511600-94515400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:94511600-94515400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr1:94511600-94515400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr1:94511600-94515400	Weak transcription	A549	lung
30	chr1:94511600-94515800	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr1:94511600-94515800	Weak transcription	Stomach Mucosa	stomach
32	chr1:94511600-94515800	Weak transcription	NHLF	lung
33	chr1:94511600-94520800	Weak transcription	Brain Angular Gyrus	brain
34	chr1:94511800-94513400	Weak transcription	HSMM	muscle
35	chr1:94511800-94513400	Weak transcription	Osteobl	bone
36	chr1:94511800-94513600	Weak transcription	NH-A	brain
37	chr1:94511800-94514200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr1:94511800-94515200	Weak transcription	HMEC	breast
39	chr1:94511800-94515200	Weak transcription	NHEK	skin
40	chr1:94511800-94515400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr1:94511800-94515800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr1:94511800-94518000	Weak transcription	Fetal Stomach	stomach
43	chr1:94512200-94513400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr1:94512200-94514000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr1:94512200-94515000	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr1:94512400-94513800	Enhancers	Lung	lung
47	chr1:94512400-94514200	Enhancers	Adipose Nuclei	Adipose
48	chr1:94512400-94514600	Enhancers	Placenta Amnion	Placenta Amnion
49	chr1:94512400-94515400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr1:94512400-94515800	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links