Variant report

Variant	rs148901014
Chromosome Location	chr1:190707588-190707589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RGS18-4	chr1:190707568-190707640	ENSG00000231175.1

Extended variants
information (count: 41 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:41 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932040	chr1:190005334-190914580	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1001216	chr1:190548529-191070623	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427874	chr1:190581339-190867945	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv997479	chr1:190609151-191388347	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv872769	chr1:190615637-190769794	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv548557	chr1:190635780-190709144	Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	nsv872770	chr1:190637116-190735457	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv872771	chr1:190637116-190769794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv872772	chr1:190637116-190794433	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv872773	chr1:190637116-190989756	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv872774	chr1:190651533-190794433	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv548559	chr1:190653512-190719032	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
13	nsv466794	chr1:190653512-190745969	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv466805	chr1:190653512-190745969	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv466816	chr1:190653512-190745969	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv548560	chr1:190653512-190745969	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv466827	chr1:190653512-190813289	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv466839	chr1:190653512-190813289	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv548561	chr1:190653512-190813289	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv872778	chr1:190655320-190713300	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
21	nsv872779	chr1:190655320-190735457	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	nsv872783	chr1:190658429-190709144	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
23	nsv548564	chr1:190658429-190713300	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
24	nsv548565	chr1:190658429-190719032	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
25	nsv872784	chr1:190658429-190735457	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
26	nsv466883	chr1:190664289-190719032	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
27	nsv548566	chr1:190664289-190719032	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
28	nsv466894	chr1:190664289-190749781	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
29	nsv548567	chr1:190664289-190749781	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
30	nsv466905	chr1:190664289-190769794	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
31	nsv548568	chr1:190664289-190769794	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
32	nsv1012075	chr1:190669682-190710120	Enhancers	lncRNA	n/a	inside rSNPs	n/a
33	nsv548569	chr1:190670697-190719032	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
34	nsv548570	chr1:190675536-190747901	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
35	nsv466916	chr1:190675536-190769794	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
36	nsv548571	chr1:190675536-190769794	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
37	nsv548572	chr1:190675536-190773829	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
38	nsv872785	chr1:190681824-190744790	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
39	nsv466927	chr1:190684263-190719032	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
40	nsv548573	chr1:190684263-190719032	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
41	esv3451806	chr1:190706629-190710227	Enhancers	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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