Variant report

Variant	rs148925051
Chromosome Location	chr19:35797407-35797408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:15)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:15 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:35797054-35797462	HepG2	liver:	n/a	n/a
2	CBX3	chr19:35796616-35797462	K562	blood:	n/a	n/a
3	CBX3	chr19:35796457-35798208	K562	blood:	n/a	n/a
4	EP300	chr19:35796561-35797942	K562	blood:	n/a	chr19:35797123-35797137
5	RCOR1	chr19:35796485-35798009	K562	blood:	n/a	n/a
6	TEAD4	chr19:35796757-35797448	HepG2	liver:	n/a	n/a
7	CTCF	chr19:35797380-35797530	HEK293	kidney:	n/a	n/a
8	MAX	chr19:35797111-35797447	HepG2	liver:	n/a	chr19:35797263-35797272
9	NR2F2	chr19:35796018-35797511	K562	blood:	n/a	chr19:35796190-35796205
10	BHLHE40	chr19:35797081-35797422	HepG2	liver:	n/a	chr19:35797257-35797278
11	MYBL2	chr19:35796767-35797423	HepG2	liver:	n/a	n/a
12	USF2	chr19:35797101-35797439	HepG2	liver:	n/a	chr19:35797257-35797278
13	TEAD4	chr19:35796645-35797468	K562	blood:	n/a	n/a
14	ATF3	chr19:35796689-35797439	K562	blood:	n/a	n/a
15	FOXA1	chr19:35796937-35797444	HepG2	liver:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:35794875..35797641-chr19:35798078..35800124,2	MCF-7	breast:
2	chr19:35797242..35798191-chr19:35843391..35844009,2	MCF-7	breast:
3	chr19:35796764..35800582-chr19:36132788..36136056,3	K562	blood:
4	chr19:35757193..35760230-chr19:35795583..35800096,4	K562	blood:
5	chr19:35795438..35798240-chr19:35810195..35811788,2	MCF-7	breast:
6	chr19:35794837..35799903-chr19:35800719..35807404,10	MCF-7	breast:
7	chr19:35759321..35763199-chr19:35795656..35798701,4	MCF-7	breast:
8	chr19:35646046..35647977-chr19:35796625..35798576,2	K562	blood:

No data

Variant related genes	Relation type
MAG	TF binding region
ENSG00000105699	Chromatin interaction
ENSG00000105695	Chromatin interaction
ENSG00000105698	Chromatin interaction
ENSG00000105672	Chromatin interaction
ENSG00000012124	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv510765	chr19:35708226-35890668	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	esv2758497	chr19:35711078-35887113	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	esv2758758	chr19:35711078-35887113	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv911618	chr19:35734107-35807845	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
9	nsv9711	chr19:35797190-35805196	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35774800-35809600	Weak transcription	Right Atrium	heart
2	chr19:35790000-35797800	Weak transcription	Fetal Kidney	kidney
3	chr19:35791400-35798800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr19:35792800-35801400	Genic enhancers	Brain Hippocampus Middle	brain
5	chr19:35794400-35810000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr19:35794600-35799400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr19:35795000-35797800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr19:35795000-35800400	Enhancers	HepG2	liver
9	chr19:35795200-35798800	Weak transcription	Spleen	Spleen
10	chr19:35796000-35798000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr19:35796200-35798000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr19:35796200-35799200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr19:35796200-35799600	Enhancers	Primary B cells from peripheral blood	blood
14	chr19:35796400-35797800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr19:35796400-35798200	Enhancers	Liver	Liver
16	chr19:35796600-35797600	Weak transcription	Brain Angular Gyrus	brain
17	chr19:35796600-35797800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr19:35796800-35797800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr19:35796800-35797800	Weak transcription	Brain Substantia Nigra	brain
20	chr19:35796800-35800600	Enhancers	Ovary	ovary
21	chr19:35796800-35801000	Weak transcription	Fetal Thymus	thymus
22	chr19:35797000-35799000	Enhancers	GM12878-XiMat	blood
23	chr19:35797000-35800800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr19:35797200-35798400	Flanking Active TSS	K562	blood
25	chr19:35797200-35799400	Enhancers	Primary hematopoietic stem cells	blood
26	chr19:35797200-35800000	Enhancers	Primary B cells from cord blood	blood
27	chr19:35797200-35802200	Weak transcription	Brain Anterior Caudate	brain
28	chr19:35797400-35797600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links