Variant report

Variant	rs148925197
Chromosome Location	chr22:31846432-31846433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr22:31846131-31846798	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	22:31836635-31847259..22:31936958-31958600	GM12878	blood:
2	chr22:31844458..31846488-chr22:31846838..31850631,3	K562	blood:
3	22:31836635-31847259..22:32529813-32538538	K562	blood:
4	chr22:31742672..31744282-chr22:31844664..31847017,2	MCF-7	breast:
5	22:31836635-31847259..22:32284948-32287956	Hela-S3	cervix:

Variant related genes	Relation type
EIF4ENIF1	TF binding region
ENSG00000240591	TF binding region
ENSG00000227813	Chromatin interaction
ENSG00000240591	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000239674	Chromatin interaction
ENSG00000213888	Chromatin interaction
ENSG00000232707	Chromatin interaction
ENSG00000214093	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834176	chr22:31682426-31864701	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv1063634	chr22:31797004-31921254	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	nsv459872	chr22:31833759-31977594	Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
4	nsv588894	chr22:31833759-31977594	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	esv1791934	chr22:31846234-31874194	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31797000-31884400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr22:31797000-31884400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr22:31797200-31860600	Strong transcription	Fetal Stomach	stomach
4	chr22:31797400-31846800	Strong transcription	Duodenum Mucosa	Duodenum
5	chr22:31797800-31846800	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr22:31799200-31846600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr22:31804600-31847000	Strong transcription	Sigmoid Colon	Sigmoid Colon
8	chr22:31814200-31846800	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr22:31814400-31846800	Strong transcription	Fetal Intestine Large	intestine
10	chr22:31814800-31846600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr22:31815000-31846600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr22:31815000-31846800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr22:31815000-31868200	Strong transcription	Dnd41	blood
14	chr22:31815000-31883400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr22:31815400-31846600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr22:31815400-31846600	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr22:31822200-31846600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr22:31822400-31859800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr22:31823600-31884600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr22:31827200-31846600	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr22:31827600-31846600	Strong transcription	Osteobl	bone
22	chr22:31829600-31852000	Strong transcription	Stomach Smooth Muscle	stomach
23	chr22:31829800-31846600	Strong transcription	HSMM	muscle
24	chr22:31831200-31850000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr22:31832600-31867800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr22:31832800-31846800	Strong transcription	Brain Anterior Caudate	brain
27	chr22:31833000-31846600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr22:31833000-31846800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr22:31833200-31847200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr22:31833600-31846800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr22:31836200-31846800	Strong transcription	Adipose Nuclei	Adipose
32	chr22:31836200-31873600	Weak transcription	Stomach Mucosa	stomach
33	chr22:31836800-31853000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr22:31837000-31846800	Strong transcription	Placenta	Placenta
35	chr22:31838200-31859000	Weak transcription	Hela-S3	cervix
36	chr22:31838400-31849800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr22:31838600-31854400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr22:31839200-31850000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr22:31840800-31857200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr22:31841200-31849800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr22:31841400-31848200	Weak transcription	NH-A	brain
42	chr22:31841400-31850200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr22:31842200-31848400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr22:31842600-31848000	Weak transcription	NHDF-Ad	bronchial
45	chr22:31842600-31848200	Weak transcription	K562	blood
46	chr22:31843000-31850000	Weak transcription	HepG2	liver
47	chr22:31843000-31851800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr22:31843400-31846600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr22:31843400-31847200	Strong transcription	Spleen	Spleen
50	chr22:31843400-31849000	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links