Variant report

Variant	rs148930521
Chromosome Location	chr11:34373469-34373470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34368537..34371450-chr11:34371767..34375088,3	K562	blood:
2	chr11:34373418..34375103-chr11:34377967..34379772,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv897210	chr11:34349427-34381075	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
6	esv15386	chr11:34372810-34373616	Weak transcription Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34364200-34376600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:34366400-34374000	Enhancers	Psoas Muscle	Psoas
3	chr11:34367000-34376200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:34367200-34375200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:34367400-34376400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:34367800-34376400	Weak transcription	Pancreas	Pancrea
7	chr11:34368200-34375000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:34368200-34376600	Weak transcription	Brain Angular Gyrus	brain
9	chr11:34368400-34375800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:34368400-34376200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:34368400-34377800	Weak transcription	Gastric	stomach
12	chr11:34368600-34374200	Weak transcription	Stomach Mucosa	stomach
13	chr11:34368600-34376400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:34368800-34374800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr11:34368800-34376200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:34368800-34376200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:34370800-34376400	Weak transcription	Lung	lung
18	chr11:34371000-34376400	Weak transcription	Fetal Heart	heart
19	chr11:34371000-34376400	Weak transcription	Fetal Thymus	thymus
20	chr11:34371400-34376400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:34371400-34376800	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:34371600-34376200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:34371800-34375800	Weak transcription	Right Atrium	heart
24	chr11:34371800-34376200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr11:34371800-34376200	Weak transcription	Placenta	Placenta
26	chr11:34371800-34376200	Weak transcription	Hela-S3	cervix
27	chr11:34372000-34373800	Enhancers	A549	lung
28	chr11:34372000-34376200	Weak transcription	HSMM	muscle
29	chr11:34372000-34376200	Weak transcription	NH-A	brain
30	chr11:34372000-34377200	Weak transcription	Aorta	Aorta
31	chr11:34372200-34374800	Weak transcription	Brain Germinal Matrix	brain
32	chr11:34372200-34375600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:34372200-34375600	Weak transcription	Right Ventricle	heart
34	chr11:34372200-34375800	Weak transcription	Left Ventricle	heart
35	chr11:34372200-34376200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr11:34372400-34375600	Weak transcription	Brain Substantia Nigra	brain
37	chr11:34372800-34373600	Weak transcription	HepG2	liver
38	chr11:34372800-34374800	Weak transcription	Liver	Liver
39	chr11:34372800-34376400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:34373000-34374200	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr11:34373000-34374400	Flanking Active TSS	GM12878-XiMat	blood
42	chr11:34373000-34375200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:34373000-34376200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:34373000-34376200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:34373000-34376200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr11:34373200-34373800	Enhancers	Thymus	Thymus
47	chr11:34373200-34373800	Flanking Active TSS	HSMMtube	muscle
48	chr11:34373400-34373800	Enhancers	Primary B cells from peripheral blood	blood

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