The 2.0 version of rSNPBase

Variant report

Variant rs1489613
Chromosome Location chr2:10950665-10950666
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:10929400-10951000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr2:10937200-10951000 Weak transcription H9 Cell Line embryonic stem cell
3 chr2:10937600-10951000 Weak transcription Esophagus oesophagus
4 chr2:10938200-10950800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr2:10941400-10951000 Weak transcription Aorta Aorta
6 chr2:10941400-10951400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr2:10941800-10951400 Weak transcription Placenta Amnion Placenta Amnion
8 chr2:10942200-10951000 Weak transcription Spleen Spleen
9 chr2:10942200-10951400 Weak transcription Lung lung
10 chr2:10942400-10950800 Weak transcription H1 Cell Line embryonic stem cell
11 chr2:10942400-10951200 Weak transcription Fetal Muscle Trunk muscle
12 chr2:10942800-10951000 Weak transcription Placenta Placenta
13 chr2:10943200-10951000 Weak transcription Primary neutrophils fromperipheralblood blood
14 chr2:10943200-10951600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr2:10947800-10950800 Enhancers Primary T killer memory cells from peripheral blood blood
16 chr2:10948400-10951600 Enhancers Small Intestine intestine
17 chr2:10949400-10950800 Enhancers Brain Germinal Matrix brain
18 chr2:10949600-10950800 Enhancers Liver Liver
19 chr2:10949600-10951000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
20 chr2:10949600-10951000 Weak transcription Ovary ovary
21 chr2:10949800-10950800 Transcr. at gene 5' and 3' hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
22 chr2:10949800-10950800 Weak transcription Left Ventricle heart
23 chr2:10949800-10951000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr2:10950000-10950800 Transcr. at gene 5' and 3' HUES64 Cell Line embryonic stem cell
25 chr2:10950000-10951000 Enhancers Primary T cells from cord blood blood
26 chr2:10950000-10951200 Enhancers Primary B cells from cord blood blood
27 chr2:10950000-10951400 Enhancers Fetal Stomach stomach
28 chr2:10950000-10951400 Flanking Active TSS HMEC breast
29 chr2:10950000-10951800 Flanking Active TSS Primary T helper cells PMA-I stimulated --
30 chr2:10950000-10951800 Transcr. at gene 5' and 3' K562 blood
31 chr2:10950000-10952000 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
32 chr2:10950200-10950800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr2:10950200-10950800 Enhancers Primary T helper naive cells fromperipheralblood blood
34 chr2:10950200-10950800 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
35 chr2:10950200-10950800 Enhancers Adipose Nuclei Adipose
36 chr2:10950200-10951000 Flanking Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr2:10950200-10951000 Enhancers Primary B cells from peripheral blood blood
38 chr2:10950200-10951000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
39 chr2:10950200-10951000 Enhancers Fetal Kidney kidney
40 chr2:10950200-10951000 Enhancers Fetal Thymus thymus
41 chr2:10950200-10951200 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr2:10950200-10951200 Transcr. at gene 5' and 3' HepG2 liver
43 chr2:10950200-10951400 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
44 chr2:10950200-10951400 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr2:10950200-10951400 Enhancers Fetal Intestine Small intestine
46 chr2:10950200-10951400 Enhancers Rectal Mucosa Donor 31 rectum
47 chr2:10950200-10951600 Flanking Active TSS Muscle Satellite Cultured Cells --
48 chr2:10950200-10951600 Enhancers Stomach Mucosa stomach
49 chr2:10950200-10951600 Flanking Active TSS NH-A brain
50 chr2:10950200-10951800 Flanking Active TSS iPS-18 Cell Line embryonic stem cell

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Last update: Aug 31, 2015