The 2.0 version of rSNPBase

Variant report

Variant rs148962978
Chromosome Location chr19:38611718-38611719
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:38551200-38613800 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr19:38587200-38613600 Strong transcription Cortex derived primary cultured neurospheres brain
3 chr19:38587400-38613400 Strong transcription Duodenum Mucosa Duodenum
4 chr19:38591800-38642800 Weak transcription Small Intestine intestine
5 chr19:38596000-38613800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr19:38597800-38611800 Strong transcription Osteobl bone
7 chr19:38597800-38612000 Strong transcription HSMM muscle
8 chr19:38598200-38611800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr19:38600600-38652800 Weak transcription NHDF-Ad bronchial
10 chr19:38602800-38612800 Weak transcription Hela-S3 cervix
11 chr19:38603000-38625400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr19:38604000-38613400 Strong transcription Primary B cells from cord blood blood
13 chr19:38605800-38625400 Weak transcription HMEC breast
14 chr19:38606000-38613000 Weak transcription Primary T killer naive cells fromperipheralblood blood
15 chr19:38606200-38612000 Strong transcription Primary B cells from peripheral blood blood
16 chr19:38606200-38612800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
17 chr19:38606200-38613800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
18 chr19:38607200-38613800 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
19 chr19:38607600-38613200 Strong transcription Rectal Mucosa Donor 29 rectum
20 chr19:38607600-38613400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr19:38607600-38613800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr19:38607600-38613800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
23 chr19:38607800-38613800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr19:38608400-38611800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr19:38608400-38613800 Strong transcription Liver Liver
26 chr19:38608600-38612000 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr19:38608800-38613600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr19:38608800-38614000 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr19:38608800-38614000 ZNF genes & repeats Fetal Intestine Small intestine
30 chr19:38609000-38611800 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
31 chr19:38609000-38611800 ZNF genes & repeats Fetal Stomach stomach
32 chr19:38609000-38611800 Strong transcription Skeletal Muscle Female skeletal muscle
33 chr19:38609200-38611800 ZNF genes & repeats Primary monocytes fromperipheralblood blood
34 chr19:38609400-38611800 Strong transcription Primary T cells from cord blood blood
35 chr19:38609400-38611800 Strong transcription Primary T helper cells fromperipheralblood blood
36 chr19:38609400-38611800 Strong transcription Brain Hippocampus Middle brain
37 chr19:38609400-38611800 Strong transcription Gastric stomach
38 chr19:38609400-38613000 Strong transcription Brain Germinal Matrix brain
39 chr19:38609400-38613800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
40 chr19:38609600-38611800 ZNF genes & repeats Primary hematopoietic stem cells blood
41 chr19:38609600-38611800 Strong transcription Fetal Kidney kidney
42 chr19:38609600-38611800 Strong transcription Thymus Thymus
43 chr19:38609600-38613800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr19:38609800-38611800 Strong transcription HUES48 Cell Line embryonic stem cell
45 chr19:38609800-38611800 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
46 chr19:38609800-38611800 Strong transcription Primary neutrophils fromperipheralblood blood
47 chr19:38609800-38611800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr19:38609800-38611800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr19:38609800-38611800 Strong transcription Colon Smooth Muscle Colon
50 chr19:38609800-38611800 Strong transcription Pancreatic Islets Pancreatic Islet

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Last update: Aug 31, 2015