Variant report

Variant	rs149003964
Chromosome Location	chr16:72802310-72802311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534039	chr16:72287171-72851170	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1063049	chr16:72577004-72887111	Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv542952	chr16:72577004-72887111	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1868	chr16:72801962-72820054	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72783800-72810600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:72793600-72802400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr16:72794800-72818000	Weak transcription	Aorta	Aorta
4	chr16:72795400-72802400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr16:72798200-72802800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr16:72798400-72802400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr16:72798400-72802400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr16:72798400-72802400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr16:72798400-72817800	Weak transcription	HSMM	muscle
10	chr16:72798800-72802400	Weak transcription	Fetal Kidney	kidney
11	chr16:72798800-72815600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr16:72800600-72802600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr16:72801000-72808000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr16:72802200-72803400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr16:72802200-72803400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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